| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yehQ
Identifier: 30063555
GI number: 30063555
Start: 2199292
End: 2201295
Strand: Direct
Name: yehQ
Synonym: S2316
Alternate gene names: 30063555
Gene position: 2199292-2201295 (Clockwise)
Preceding gene: 30063554
Following gene: 30063558
Centisome position: 47.82
GC content: 54.39
Gene sequence:
>2004_bases ATGAATTCACTACGTCCGGAATTATTAGAACTGACACCGCAGGCACTGACGGCGTTAAGCAATGCCGGTTTTGTTAAGCG CAGCCTTAAGGAACTGGAAAATGGCAACGTCCCGGAAATCAGCCATGAGAACAGCGCTTTAATCGCCACCTTCAGTGACG GTGTCCGTACCCAGCTGGCGAACGGCCAGGCACTGAAAGAGGCTCAGTGCACCTATGGGGCCAGCGGCATGTGCCGTCAT CGCGTGATGCTGGTGTTAAGTTATCAACGACTTTGTGCTACCGCCCAGCCTACGGGAAAAGAAGAGGAATGGGATCCGGC AATCTGGCTGGAAGAACTGGCTACCCTTCCCGATGCCACCCGCAAACGCGCACAGGCGCTGGTCGCTAAAAGCATCACCA TTGAGTTGTTCTGTGCGCCGGGTGAAATTCCCTCTGCCCGCTTACCGATGAGCGATGTGCGTTTTTATTCCCGCAGCAGT ATTCGTTTCGCCCGTTGTGATTGTATTGAAGGCACACTTTGCGAACATGTCGTACTGGCAGTACAGGCCTTTGTCCAGGC AAAAGCGCAGCAAGCGGAATTGACTCATTTAATCTGGCAGATGCGCAGCGAACACGTCACATCATCTGACGATCCGTTTG CCAGCGAAGAAGGCAAAACGTGTCGTCAATATGTTCAACAACTAAGCCAGGCATTATGGCTGAGCGGCATCAGCCAGCCG CTTATTCACTACGAGGCCGCTTTCAGCCGCGCGCAGCAAGCAGCGGAACGCTGCAGCTGGCGATGGGTGAGTGAATCGCT ACGGCAACTGCGCGCCAGCGTTGATGCCTTCCACGCCCGCGCCAGCCACTATCATGCCGGAGAATGCTTACGTCAGCTTG CGGCATTAAACAGTCGATTAAATTGCGCACAAGAGATGGCCCGGAGCGACAGTGTTGGTGAAGTTCCTCCTGTGCCGTGG CGCACGGTCGTTGGCTCTGGCATTGCCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTG GCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTT GGCCGCGAAGTGAACAGGAAGACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGTGGG CAAATTGTTTCACAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGT ACCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTAC GCCAGCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCG CTCGGTTGGGATAGCAGCCGCCAGACGCTGGATGCGCAGGTAATCAGCGGCGAAGGTGAAGATAATCTGCTGACGTTATC ACTGCCAGCCTCAGCCAGCGCGCCTTATGCCATTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTC TGGTTTCTGGCTTTGTCAGTTTTGTTGATGGGCAATTGACACTGGAACCACAGGTAATGATGACAAAGACTCGTGCCTGG GCGCTGGACGCAGAAACTGCGCCTGTGGTGGTATCACTACCTTCTGCCAGCGTTCTGCCTGTGCCGTCTACTGCTCATCA GTTGCTGATGCGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGCGCTATTAATC AGGCAGAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGCACAATTTCGTAATACA GAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGG ATGA
Upstream 100 bases:
>100_bases ATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACACCGGGCGAGCTGGCATCATGG CTTGCGGAGAATCTTCAGTC
Downstream 100 bases:
>100_bases AATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCT GGTGAGAGTCACCAGTTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 667; Mature: 667
Protein sequence:
>667_residues MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENSALIATFSDGVRTQLANGQALKEAQCTYGASGMCRH RVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDATRKRAQALVAKSITIELFCAPGEIPSARLPMSDVRFYSRSS IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRLNCAQEMARSDSVGEVPPVPW RTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQEDSPAATRRLFSFQAGALAGG QIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS LGWDSSRQTLDAQVISGEGEDNLLTLSLPASASAPYAIERMAALLQQTDDPVCLVSGFVSFVDGQLTLEPQVMMTKTRAW ALDAETAPVVVSLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAINQAELLANDLTAVGFYRLAHVLAQFRNT ESEARVEAMNNGVLLCEQLFPMLQQQG
Sequences:
>Translated_667_residues MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENSALIATFSDGVRTQLANGQALKEAQCTYGASGMCRH RVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDATRKRAQALVAKSITIELFCAPGEIPSARLPMSDVRFYSRSS IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRLNCAQEMARSDSVGEVPPVPW RTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQEDSPAATRRLFSFQAGALAGG QIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS LGWDSSRQTLDAQVISGEGEDNLLTLSLPASASAPYAIERMAALLQQTDDPVCLVSGFVSFVDGQLTLEPQVMMTKTRAW ALDAETAPVVVSLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAINQAELLANDLTAVGFYRLAHVLAQFRNT ESEARVEAMNNGVLLCEQLFPMLQQQG >Mature_667_residues MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENSALIATFSDGVRTQLANGQALKEAQCTYGASGMCRH RVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDATRKRAQALVAKSITIELFCAPGEIPSARLPMSDVRFYSRSS IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRLNCAQEMARSDSVGEVPPVPW RTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQEDSPAATRRLFSFQAGALAGG QIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS LGWDSSRQTLDAQVISGEGEDNLLTLSLPASASAPYAIERMAALLQQTDDPVCLVSGFVSFVDGQLTLEPQVMMTKTRAW ALDAETAPVVVSLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAINQAELLANDLTAVGFYRLAHVLAQFRNT ESEARVEAMNNGVLLCEQLFPMLQQQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 SWIM-type zinc fingers [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007527 [H]
Pfam domain/function: PF04434 SWIM [H]
EC number: NA
Molecular weight: Translated: 73641; Mature: 73641
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS50966 ZF_SWIM L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENSALIATFSDGVRTQLA CCCCCCHHHHHCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHC NGQALKEAQCTYGASGMCRHRVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDAT CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHH RKRAQALVAKSITIELFCAPGEIPSARLPMSDVRFYSRSSIRFARCDCIEGTLCEHVVLA HHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH VQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH NCAQEMARSDSVGEVPPVPWRTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFT HHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE DPDTGSILHLSRSWPRSEQEDSPAATRRLFSFQAGALAGGQIVSQAAKRSADGELLLATR CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEH NRLSSVVPLSPDAWQMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS HHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCHHHHCCEEEEEHHHHHH LGWDSSRQTLDAQVISGEGEDNLLTLSLPASASAPYAIERMAALLQQTDDPVCLVSGFVS CCCCCCCHHHHHEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH FVDGQLTLEPQVMMTKTRAWALDAETAPVVVSLPSASVLPVPSTAHQLLMRCQALLIQLL HHCCCEEECCHHHEEHHHHEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH HNGWRYQEQSAINQAELLANDLTAVGFYRLAHVLAQFRNTESEARVEAMNNGVLLCEQLF HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEHHHHH PMLQQQG HHHHCCC >Mature Secondary Structure MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENSALIATFSDGVRTQLA CCCCCCHHHHHCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHC NGQALKEAQCTYGASGMCRHRVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDAT CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHH RKRAQALVAKSITIELFCAPGEIPSARLPMSDVRFYSRSSIRFARCDCIEGTLCEHVVLA HHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH VQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH NCAQEMARSDSVGEVPPVPWRTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFT HHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE DPDTGSILHLSRSWPRSEQEDSPAATRRLFSFQAGALAGGQIVSQAAKRSADGELLLATR CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEH NRLSSVVPLSPDAWQMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS HHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCHHHHCCEEEEEHHHHHH LGWDSSRQTLDAQVISGEGEDNLLTLSLPASASAPYAIERMAALLQQTDDPVCLVSGFVS CCCCCCCHHHHHEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH FVDGQLTLEPQVMMTKTRAWALDAETAPVVVSLPSASVLPVPSTAHQLLMRCQALLIQLL HHCCCEEECCHHHEEHHHHEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH HNGWRYQEQSAINQAELLANDLTAVGFYRLAHVLAQFRNTESEARVEAMNNGVLLCEQLF HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEHHHHH PMLQQQG HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]