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The map label for this gene is ybcM [H]

Identifier: 30063375

GI number: 30063375

Start: 1987178

End: 1987915

Strand: Reverse

Name: ybcM [H]

Synonym: S4819

Alternate gene names: 30063375

Gene position: 1987915-1987178 (Counterclockwise)

Preceding gene: 30063376

Following gene: 30063373

Centisome position: 43.22

GC content: 37.13

Gene sequence:

>738_bases
ATGCTGGCAAGAGATAAGTCTAACCTAAAGATTGAAGAAATACGGATGCATAAACATCATGAGATTCACAGGGTTAAGCC
TCTTATGCCAGCTTTATGTCGTATCCGTCAGGGAAAAAAAGTTATCAATTGGGAGACGCATAGTCTAACTGTTGATAATA
ATCAGATAATATTATTTCCCTGTGGATATGAATTTTATATTGTGAATTATCCAGAAGCAGGTCTTTATCTTGCAGAAATG
CTTTATTATCCCATTGATCTAATTGAAAAGTTTCAAAAATTTTATGCGATAACTGATCAAATTCGTAACACGACAGGTTT
CTGCTTACCTCAGAACCCCGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTATTTCCCGAGGCTTCTCAACGCAAA
TTCAGGAACACTTAGCAATGGGCGTTCTACTTTCATTAGGAGCACATCATGTTAATTGTTTACTTTTATCAGATAGTAAA
CAATCATTAATAAGTCGTTGTTATAACCTAATGCTATCCGAACCTAGAACAAAATGGACAGCAAACAAGGTAGCGAGATA
TCTCTACATTTCTGTTTCCACATTGCATCGCCGTCTGGCAAGCGAGGGAATAAGTTTTCAAAGTATATTGGACGACGTGA
GGTTAAATAATGCGTTGTCCTGCTATACAAACGACAGTAAAACCCATCAGCGAGATTGCCAGGGAAAATGGTTACAAGTG
TCCTTCTCGTTTTACTGA

Upstream 100 bases:

>100_bases
TTCTAATTCCAGCGGAGCGTTAGTTGGTTATATGCTTAATGCCAATAAAATTGCAACCGCTGAGATAACACCAGTTTATG
AGATAAAATAGGGTAAGAGT

Downstream 100 bases:

>100_bases
AAGGTTCCATAATCGTTTTAATATAACACCAAGAGAGCTAAGAAAAGCGTCCAGAGAGTAAAAGTATTTTATTAAGGAGC
AACAGCATCGATTTTTATTT

Product: putative regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLARDKSNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIVNYPEAGLYLAEM
LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPRTKWTANKVARYLYISVSTLHRRLASEGISFQSILDDVRLNNALSCYTNDSKTHQRDCQGKWLQV
SFSFY

Sequences:

>Translated_245_residues
MLARDKSNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIVNYPEAGLYLAEM
LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPRTKWTANKVARYLYISVSTLHRRLASEGISFQSILDDVRLNNALSCYTNDSKTHQRDCQGKWLQV
SFSFY
>Mature_245_residues
MLARDKSNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIVNYPEAGLYLAEM
LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPRTKWTANKVARYLYISVSTLHRRLASEGISFQSILDDVRLNNALSCYTNDSKTHQRDCQGKWLQV
SFSFY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=221, Percent_Identity=90.0452488687783, Blast_Score=417, Evalue=1e-118,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28600; Mature: 28600

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARDKSNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEE
CGYEFYIVNYPEAGLYLAEMLYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWE
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHH
QLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPRTKWT
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHH
ANKVARYLYISVSTLHRRLASEGISFQSILDDVRLNNALSCYTNDSKTHQRDCQGKWLQV
HHHHHHHHEEHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCEEEE
SFSFY
EEECC
>Mature Secondary Structure
MLARDKSNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEE
CGYEFYIVNYPEAGLYLAEMLYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWE
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHH
QLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPRTKWT
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHH
ANKVARYLYISVSTLHRRLASEGISFQSILDDVRLNNALSCYTNDSKTHQRDCQGKWLQV
HHHHHHHHEEHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCEEEE
SFSFY
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]