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The map label for this gene is sdiA

Identifier: 30063360

GI number: 30063360

Start: 1969007

End: 1969633

Strand: Reverse

Name: sdiA

Synonym: S2055

Alternate gene names: 30063360

Gene position: 1969633-1969007 (Counterclockwise)

Preceding gene: 30063361

Following gene: 30063358

Centisome position: 42.82

GC content: 47.05

Gene sequence:

>627_bases
ATGCAGGATACGGATTTTTTCAGCTGGCGTCGCACGATGCTGTTGCGTTTTCAGAGGATGGAGGCCGCAGAAGAGGCCTA
CCATGAAATAGAGCTTCAGGCTCAGCAGCTGGAGTACGATTACTATTCGTTATGTGTTCGCCACCCGGTACCATTCACGC
GACCTAAAGTGGCTTTCTACACCAATTACCCTGAGTCGTGGGTTAGTTATTATCAGGCAAAAAATTTTCTCGCAATTGAT
CCTGTGCTGAACCCTGAAAACTTTAGTCAGGGCCATTTAATGTGGAATGATGACTTATTCAGCGAAGCACAGCCATTATG
GGAAGCCGCGCACGCACATGGTTTACGCCGCGGTGTCACTCAGTATTTAATGCTGCCAAATCGGGCGCTGGGCTTTTTGT
CCTTTTCCCGTTGCAGCACGCGCGAAATACCCATTCTTAGTGATGAACTGCAATTAAAAATGCAGTTACTGGTGCGCGAA
AGTCTGATGGCTCTGATGCGTTTAAATGATGAAATAGTGATGACGCCAGAGATGAATTTCAGCAAGCGCGAAAAAGAAAT
TCTGAAATGGACGGCGGAAGGGAAGACATCAGCAGAGATAGCGATGATTTTGTCAATAACCGGCTGA

Upstream 100 bases:

>100_bases
CATTGCCTGAATAATATAAATTATATATAAATCTTATTTATGTGATAGTTTGAATTATCATTATAAATGATACTCACTCT
CAGGGGCGTTGCGGTTTACT

Downstream 100 bases:

>100_bases
AAGGCACGCTCTCAGCCGGTTTTATATTACTGACGGTAGGCTTGTTTAATTTGCTTAACCGTTTTGGAAAATACTGCAGC
CTGGGTTTCGTCTTCGATCA

Product: transcriptional regulator of ftsQAZ gene cluster

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MQDTDFFSWRRTMLLRFQRMEAAEEAYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAID
PVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRE
SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSITG

Sequences:

>Translated_208_residues
MQDTDFFSWRRTMLLRFQRMEAAEEAYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAID
PVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRE
SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSITG
>Mature_208_residues
MQDTDFFSWRRTMLLRFQRMEAAEEAYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAID
PVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRE
SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSITG

Specific function: Activates cell division by specifically increasing transcription from one of the two promoters that lie immediately upstream of the ftsQAZ gene cluster. Activates ydiV expression in response to extracellular autoinducer AI-1 (Vibrio fischeri autoinducer o

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=207, Percent_Identity=96.1352657004831, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 24473; Mature: 24473

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDTDFFSWRRTMLLRFQRMEAAEEAYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE
TNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVT
ECCCHHHHHHHHHCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
QYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNF
HHHHCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
SKREKEILKWTAEGKTSAEIAMILSITG
CHHHHHHHHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MQDTDFFSWRRTMLLRFQRMEAAEEAYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE
TNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVT
ECCCHHHHHHHHHCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
QYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNF
HHHHCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
SKREKEILKWTAEGKTSAEIAMILSITG
CHHHHHHHHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3515318; 9097040; 9278503; 1915297 [H]