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The map label for this gene is ydhX [H]

Identifier: 30063184

GI number: 30063184

Start: 1769442

End: 1770161

Strand: Reverse

Name: ydhX [H]

Synonym: S1831

Alternate gene names: 30063184

Gene position: 1770161-1769442 (Counterclockwise)

Preceding gene: 30063185

Following gene: 30063183

Centisome position: 38.49

GC content: 49.72

Gene sequence:

>720_bases
ATGTCATGGATAGGGTGGACAGTTGCAGCCACTGCATTAGGGGATAATCAGATGTCCTTCACTCGACGCAAATTTGTTCT
GGGGATGGGAACAGTAATCTTTTTTACTGGTTCTGCGTCTTCTCTGTTAGCGAACACGAGGCAAGAAAAGGAAGTTCGGT
ATGCCATGATTCATGACGAGTCACGGTGCAATGGCTGTAATATTTGCGCCCGCGCATGCCGTAAAACTAACCACGTCCCC
GCTCAGGGAAGCCGTTTATCGATAGCACACATTCCAGTCACCGATAACGACAACGAAACGCAGTATCACTTTTTTCGCCA
GTCATGTCAGCACTGCGAAGATGCTCCGTGCATCGACGTATGCCCGACGGGGGCATCGTGGCGTGATGAGCAGGGGATCG
TGCGGGTAGAAAAATCGCAGTGCATCGGCTGCAGTTATTGCATTGGCGCTTGTCCGTACCTGGTTCGCTACCTTAACCCT
GTCACTAAAGTGGCAGATAAATGTGATTTCTGCGCTGAGTCCCGACTGGCAAAAGGCTTTCCGCCCATTTGCGTCAGCGC
CTGTCCGGAACACGCATTGATCTTTGGTCGCGAAGATAGCCCAGAAATTCAGGCGTGGTTGCAGGATAATAAATACTATC
AATATCAGCTACCTGGTACCGGAAAACCGCATCTGTATCGCCGGTTCGGTCAACATTTGATTAAAAAGGAAAATGTATGA

Upstream 100 bases:

>100_bases
GTACTTGTTTAGCGAGCGATTTATGACCTATGGCAAGGCTTATGGCTTATGCGAATGGTTCGAGGTAGAGCAGTTTCAGA
ACCCCTGAAATTTCAGGGAG

Downstream 100 bases:

>100_bases
ACCCGTCGCAACATGCTGAACAGTTTCAGAGCCAGTTAGCGAACTATGTGCCACAGTTCACTCCCGAATTTTGGCCGGTG
TGGTTGATCATTGCCGGAGT

Product: putative oxidoreductase, Fe-S subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYLVRYLNP
VTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGTGKPHLYRRFGQHLIKKENV

Sequences:

>Translated_239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYLVRYLNP
VTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGTGKPHLYRRFGQHLIKKENV
>Mature_238_residues
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPA
QGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYLVRYLNPV
TKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGTGKPHLYRRFGQHLIKKENV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=98.6486486486486, Blast_Score=462, Evalue=1e-131,
Organism=Escherichia coli, GI2367345, Length=213, Percent_Identity=49.7652582159624, Blast_Score=215, Evalue=2e-57,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=38.7096774193548, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=38.8157894736842, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789370, Length=209, Percent_Identity=31.1004784688995, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787749, Length=188, Percent_Identity=30.3191489361702, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790326, Length=181, Percent_Identity=29.8342541436464, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=35.4430379746835, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=28.476821192053, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI2367245, Length=144, Percent_Identity=36.8055555555556, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=33.7837837837838, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787740, Length=86, Percent_Identity=36.046511627907, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787478, Length=86, Percent_Identity=36.046511627907, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789079, Length=172, Percent_Identity=29.0697674418605, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87082114, Length=182, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26898; Mature: 26767

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYLVRYLNPVTKVADKCDFCAESRLAKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGTGKPHLYRRFGQHLIKKENV
CCHHHHCCCCCEEEECCCCCHHHHHEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYLVRYLNPVTKVADKCDFCAESRLAKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGTGKPHLYRRFGQHLIKKENV
CCHHHHCCCCCEEEECCCCCHHHHHEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]