| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is malI
Identifier: 30063135
GI number: 30063135
Start: 1714506
End: 1715534
Strand: Reverse
Name: malI
Synonym: S1777
Alternate gene names: 30063135
Gene position: 1715534-1714506 (Counterclockwise)
Preceding gene: 161486482
Following gene: 30063134
Centisome position: 37.3
GC content: 54.42
Gene sequence:
>1029_bases ATGGCTACCGCCAAAAAAATAACCATTCATGATGTTGCGCTGGCTGCGGGCGTGTCGGTAAGTACCGTTTCGCTGGTGCT TAATGGCAAAGGGCGAATCTCTACCGCCACAGGAGAACGCGTTAACGCCGCCATTGAAGAGCTGGGATTTGTGCGCAATC GCCAGGCGTCGGCGCTGCGCGGCGGGCAAAGCGGCGTCATTGGTTTGATCGTCCGTGATTTATCTGCGCCGTTTTACGCC GAATTGACGGCCGGATTGACGGAAGCTCTGGAAGCACAGGGACGGATGGTTTTTTTGCTTCACGGCGGTAAAGACGGCGA GCAGCTGGCACAGCGGTTTTCACTGTTACTGAATCAGGGTGTCGATGGTGTGGTAATTGCCGGGGCTGCAGGAAGCAGCG ATGACCTGCGGCGGATGGCAGAAGAAAAAGCTATCCCGGTGATTTTCGCTTCCCGTGCCAGTTATCTTGATGATGTTGAT ACGGTTCGCCCGGACAACATGCAGGCTGCACAGTTGTTGACGGAGCATCTCATTCGCAATGGGCATCAGCGGATCGCCTG GCTGGGAGGGCAAAGTTCCTCATTAACCCGTGCAGAACGGGTGGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGC CGTTTCACAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCAT AACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTGAAAGCAGGGCG GCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAACAGGTTTCGCTGGCGGCATTTACCGATGCGACACCAACCA CACTTGATGATATACCTGTTACCTGGGCCAGCACGCCAGCGCGGGAACTTGGTATCACACTTGCGGATCGCATGATGCAA AAAATCACCCATGAAGAGACGCATTCACGCAATCTTATTATTCCCGCCCGGCTCATTGCGGCGAAATAA
Upstream 100 bases:
>100_bases GTGAGTCATAAATCACATTACGCAACGATAATAGCGGGTATAAGATAAATAAAAGGTAAAACGTTTTATCTGTCACATAA TCAGGGAGTAGGTCATCTGC
Downstream 100 bases:
>100_bases TCCTCTCTTTATCTGCTATACTTGGTAGTGTCCTTTCCTCAAGGTTAATGATAAAAAATGTGGCACACAGGCGGTGCCTT TTATTTTTACTGAAGTTCAC
Product: DNA-binding transcriptional repressor MalI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MATAKKITIHDVALAAGVSVSTVSLVLNGKGRISTATGERVNAAIEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYA ELTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRH NPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGITLADRMMQ KITHEETHSRNLIIPARLIAAK
Sequences:
>Translated_342_residues MATAKKITIHDVALAAGVSVSTVSLVLNGKGRISTATGERVNAAIEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYA ELTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRH NPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGITLADRMMQ KITHEETHSRNLIIPARLIAAK >Mature_341_residues ATAKKITIHDVALAAGVSVSTVSLVLNGKGRISTATGERVNAAIEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAE LTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVDT VRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRHN PTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGITLADRMMQK ITHEETHSRNLIIPARLIAAK
Specific function: Repressor for the malX and malY genes. Also regulates its own expression. Binds maltose as an inducer [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787906, Length=342, Percent_Identity=99.7076023391813, Blast_Score=695, Evalue=0.0, Organism=Escherichia coli, GI1790194, Length=325, Percent_Identity=26.1538461538462, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI48994940, Length=330, Percent_Identity=27.8787878787879, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789068, Length=317, Percent_Identity=28.7066246056782, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1790369, Length=316, Percent_Identity=26.2658227848101, Blast_Score=107, Evalue=9e-25, Organism=Escherichia coli, GI1788474, Length=261, Percent_Identity=30.2681992337165, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1789202, Length=289, Percent_Identity=28.719723183391, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1786540, Length=343, Percent_Identity=26.530612244898, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1787580, Length=313, Percent_Identity=26.517571884984, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787948, Length=335, Percent_Identity=23.8805970149254, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790689, Length=258, Percent_Identity=27.906976744186, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1790715, Length=335, Percent_Identity=25.3731343283582, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786268, Length=187, Percent_Identity=24.0641711229947, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000843 - InterPro: IPR010982 - InterPro: IPR001761 [H]
Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]
EC number: NA
Molecular weight: Translated: 36652; Mature: 36521
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATAKKITIHDVALAAGVSVSTVSLVLNGKGRISTATGERVNAAIEELGFVRNRQASALR CCCCCEEEHHHHHHHCCCCEEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHCCCHHHHC GGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLLNQG CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC VDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVDTVRPDNMQAAQLLTEHLIRN CCEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHC GHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRH CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHC NPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPV CCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCC TWASTPARELGITLADRMMQKITHEETHSRNLIIPARLIAAK EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCC >Mature Secondary Structure ATAKKITIHDVALAAGVSVSTVSLVLNGKGRISTATGERVNAAIEELGFVRNRQASALR CCCCEEEHHHHHHHCCCCEEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHCCCHHHHC GGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLLNQG CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC VDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVDTVRPDNMQAAQLLTEHLIRN CCEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHC GHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRH CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHC NPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPV CCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCC TWASTPARELGITLADRMMQKITHEETHSRNLIIPARLIAAK EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2670898; 1856179; 9097039; 9278503 [H]