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The map label for this gene is lsrF [H]

Identifier: 30063080

GI number: 30063080

Start: 1649141

End: 1649923

Strand: Reverse

Name: lsrF [H]

Synonym: S1704

Alternate gene names: 30063080

Gene position: 1649923-1649141 (Counterclockwise)

Preceding gene: 161486490

Following gene: 30063079

Centisome position: 35.87

GC content: 50.57

Gene sequence:

>783_bases
CTGGATTGGGGAATGCAGTCACGCTTATCGTGGATATTTAATCCGAAAACGGGTAAAACTGTGATGCTGGCCTTTGACCA
TGGTTATTTTCAGGGGCCGACTATCGGACTTGAACGCATTGATATAAATATCGCCCCGCTGTTTGAACATGCCGATGTAT
TAATGTGTACGCGCGGCATTTTGCGCAGCGTAGTTCCCCCGGCGACCAATAAGCCGGTGGTACTGCGGGCGTCAGGTGCG
AACTCTATTCTGGCGGAATTAAGTAATGAAGCCGTGGCGTTATCGATGGATGATGCCGTGCGCCTGAACAGTTGCGCGGT
GGCGGCGCAGGTTTATATCGGCAGCGAATATGAACATCAGTCGATCAAAAATATTATTCAGCTGGTCGATGCCGGAATGA
AAGTGGGAATGCCGACCATGGCCGTGACTGGCGTGGGCAAAGATATGGTGCGCGATCAGCGTTATTTCTCGCTCGCGACT
CGAATCGCCGCTGAAATGGGGGCGCAAATTATCAAAACCTATTATGTCGAAAAAGGTTTTGAACGGATTGTTGCCGGATG
TCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGACGCTGGAAATGTGCTGGCAGGCTATCGATC
AGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGGTGGCGATGATGAAAGCCGTACAGGCG
GTGGTTCACCATAACGAAACGGCTGATCGGGCATATGAACTCTATCTGAGTGAAAAACAGTAA

Upstream 100 bases:

>100_bases
TAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGG
AAATATAGGGGCAAATCCAG

Downstream 100 bases:

>100_bases
CTGCGGATTTAAGGAGAAGAATTATGCACGTCACACTGGTTGAAATTAACGTTCATGAAGACAAGGTTGACGAGTTTATC
GAAGTTTTTCGCCAGAACCA

Product: aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MDWGMQSRLSWIFNPKTGKTVMLAFDHGYFQGPTIGLERIDINIAPLFEHADVLMCTRGILRSVVPPATNKPVVLRASGA
NSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLAT
RIAAEMGAQIIKTYYVEKGFERIVAGCPVPIVIAGGKKLPERETLEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQA
VVHHNETADRAYELYLSEKQ

Sequences:

>Translated_260_residues
MDWGMQSRLSWIFNPKTGKTVMLAFDHGYFQGPTIGLERIDINIAPLFEHADVLMCTRGILRSVVPPATNKPVVLRASGA
NSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLAT
RIAAEMGAQIIKTYYVEKGFERIVAGCPVPIVIAGGKKLPERETLEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQA
VVHHNETADRAYELYLSEKQ
>Mature_260_residues
MDWGMQSRLSWIFNPKTGKTVMLAFDHGYFQGPTIGLERIDINIAPLFEHADVLMCTRGILRSVVPPATNKPVVLRASGA
NSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLAT
RIAAEMGAQIIKTYYVEKGFERIVAGCPVPIVIAGGKKLPERETLEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQA
VVHHNETADRAYELYLSEKQ

Specific function: Could be involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle [H]

COG id: COG1830

COG function: function code G; DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family [H]

Homologues:

Organism=Escherichia coli, GI1787796, Length=260, Percent_Identity=98.0769230769231, Blast_Score=531, Evalue=1e-152,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: 4.2.1.- [C]

Molecular weight: Translated: 28534; Mature: 28534

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWGMQSRLSWIFNPKTGKTVMLAFDHGYFQGPTIGLERIDINIAPLFEHADVLMCTRGI
CCCCCCCHHHEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHH
LRSVVPPATNKPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQ
HHHHCCCCCCCCEEEEECCCHHHHHHHCCCEEEEECCCCHHHHHHHEEEEEEECCCCCHH
SIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVEKGF
HHHHHHHHHHCCHHCCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERIVAGCPVPIVIAGGKKLPERETLEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQA
HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
VVHHNETADRAYELYLSEKQ
HHHCCCHHHHHEEEEEECCC
>Mature Secondary Structure
MDWGMQSRLSWIFNPKTGKTVMLAFDHGYFQGPTIGLERIDINIAPLFEHADVLMCTRGI
CCCCCCCHHHEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHH
LRSVVPPATNKPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQ
HHHHCCCCCCCCEEEEECCCHHHHHHHCCCEEEEECCCCHHHHHHHEEEEEEECCCCCHH
SIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVEKGF
HHHHHHHHHHCCHHCCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERIVAGCPVPIVIAGGKKLPERETLEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQA
HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
VVHHNETADRAYELYLSEKQ
HHHCCCHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA