Click here to switch to the map view.

The map label for this gene is ydeF

Identifier: 30063065

GI number: 30063065

Start: 1632862

End: 1633980

Strand: Reverse

Name: ydeF

Synonym: S1687

Alternate gene names: 30063065

Gene position: 1633980-1632862 (Counterclockwise)

Preceding gene: 30063067

Following gene: 30063061

Centisome position: 35.53

GC content: 49.51

Gene sequence:

>1119_bases
ATGGCTACGCTGCCATTTATGACCATTTACTTGAGTCGCCAGTACAGCCTGAGTGTCGATCTAATCGGTTATGCGATGAC
AATTGCGCTCACTATTGGCGTCGTTTTTAGCCTCGGTTTTGGTATCCTGGCGGATAAGTTCGACAAGAAACGCTATATGT
TACTGGCAATTACCGCCTTCGCCAGCGGTTTTATTGCCATTCCTTTAGTGAATAACGTGACGCTGGTTGTGCTCTTTTTT
GCCCTCATTAACTGCGCCTATTCTGTTTTTGCTACCGTGCTGAAAGCCTGGTTTGCCGACAATCTTTCGTCCACCAGCAA
AACGAAAATCTTCTCAATCAACTACACCATGCTAAACATTGGCTGGACCATCGGTCCGCCGCTCGGCACGCTGTTGGTGA
TGCAGAGCATCAATCTGCCCTTTTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATATGGGTAAAG
CGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTG
GTTTACCTGCTCTGGTTTTCTGGCTTCTTTTGTAAGCGGCGCATTTGCTTCATGCATTTCACAATATGTGATGGTGATTG
CTGATGGGGATTTTGCCGAAAAGGTGGTCGCGGTTGTTCTTCCGGTGAATGCTGCCATGGTGGTTACGTTGCAATATTCC
GTGGGCCGCCGACTTAACCCAGCTAACATCCGCGCGCTGATGACAGCAGGCACCCTCTGTTTCGTCATCGGACTGGTCGG
TTTTATTTTTTCCGGCAACAACCTGCTATTGTGGGGTATGTCAGCTGCGGTATTTACTGTCGGTGAAATCATTTATGCGC
CGGGCGAGTATATGTTGATTGACCATATTGCGCCGCCAGGAATGAAAGCCAGCTATTTTTCCGCCCAGTCTTTAGGCTGG
CTTGGTGCCGCGATTAACCCATTAGTGAGTGGCGTAGTGCTAACCAGCCTGCCGCCTTCCTCGCTGTTTGTCATCTTAGC
GTTGGTGATCATTGCTGCGTGGGTGCTGATGTTAAAAGGGATTCGTGCAAGACCGTGGGGGCAGCCCGCGCTTTGTTGA

Upstream 100 bases:

>100_bases
AGGCAAGAAGGGCGCTGGTAGAGCGTCGTAGGGATAAGTTCATTTGTCTGTCCGGCAGTGCGTTTCGTTATGTTTTATTT
TAGAGATGTAAAGAAATAGC

Downstream 100 bases:

>100_bases
TTTAAGTCGAACACAATAAAAATTTAATTCAGCCTTCGTTTAGGTTATCTCTGCTAATATCTTTCTCATTGAGATGAAAA
TTAAGGTAAGCGAGGAAACA

Product: putative transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFF
ALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVK
RSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVNAAMVVTLQYS
VGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNNLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGW
LGAAINPLVSGVVLTSLPPSSLFVILALVIIAAWVLMLKGIRARPWGQPALC

Sequences:

>Translated_372_residues
MATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFF
ALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVK
RSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVNAAMVVTLQYS
VGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNNLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGW
LGAAINPLVSGVVLTSLPPSSLFVILALVIIAAWVLMLKGIRARPWGQPALC
>Mature_371_residues
ATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFA
LINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVKR
SEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVNAAMVVTLQYSV
GRRLNPANIRALMTAGTLCFVIGLVGFIFSGNNLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWL
GAAINPLVSGVVLTSLPPSSLFVILALVIIAAWVLMLKGIRARPWGQPALC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787815, Length=371, Percent_Identity=99.1913746630728, Blast_Score=732, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40229; Mature: 40097

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAF
CCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHH
ASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNI
HCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE
GWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPKVLL
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEE
QDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVNAAMVVTLQYS
ECCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHEEECCCEEEEEEEHH
VGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNNLLLWGMSAAVFTVGEIIYAPGEYMLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHEECCCCEEEE
DHIAPPGMKASYFSAQSLGWLGAAINPLVSGVVLTSLPPSSLFVILALVIIAAWVLMLKG
ECCCCCCCCCHHHCHHCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCC
IRARPWGQPALC
CCCCCCCCCCCC
>Mature Secondary Structure 
ATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAF
CCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHH
ASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNI
HCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE
GWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPKVLL
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEE
QDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVNAAMVVTLQYS
ECCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHEEECCCEEEEEEEHH
VGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNNLLLWGMSAAVFTVGEIIYAPGEYMLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHEECCCCEEEE
DHIAPPGMKASYFSAQSLGWLGAAINPLVSGVVLTSLPPSSLFVILALVIIAAWVLMLKG
ECCCCCCCCCHHHCHHCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCC
IRARPWGQPALC
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8383113; 9097039; 9278503 [H]