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The map label for this gene is ydcI [H]

Identifier: 30062893

GI number: 30062893

Start: 1448558

End: 1449622

Strand: Reverse

Name: ydcI [H]

Synonym: S1486

Alternate gene names: 30062893

Gene position: 1449622-1448558 (Counterclockwise)

Preceding gene: 30062896

Following gene: 30062891

Centisome position: 31.52

GC content: 47.98

Gene sequence:

>1065_bases
GTGATCTCGCCGCGAAAACATCAATATTATCCATTTTGCTGTAACATAATTGCTTTAATTGTTAATAATATTTTGCAATC
AAGTTATCATAATCAAACAACTTCACTTGTCAGCGACACCGCTTCGTTTTTAACATCGCTTATGGAAAAAAATAGTCTGT
TTAGTCAGCGCATCCGTTTGCGCCACCTTCATACATTCGTAGCTGTCGCACAACAAGGAACTTTGGGGCGCGCAGCTGAA
ACCCTTAATTTGAGTCAACCTGCGCTCTCTAATACATTGAATGAACTGGAGCAGCTGACGGGCGCTCGCTTGTTTGAGCG
TGGTCGTCAGGGGGCGCAACTTACCTTACCCGGCGAACAATTTTTAACGCATGCAGTCAGAGTTCTTGACGCCATCAACA
CTGCCGGACAGTCGCTTCATCGTAAAGAAGGTCTTAATAATGATGTCGTCAGGGTTGGTGCACTACCTACTGCGGCACTG
GGGATATTACCTTCGGTTATAGGTCAGTTTCATCAGCAACAAAAAGAGACGACCTTGCAAGTTGCGACAATGAGTAACCC
TATGATTCTGGCGGGTTTAAAAACCGGGGAAATCGATATCGGCATTGGTCGGATGTCAGATCCTGAACTGATGACCGGGC
TTAATTACGAACTGCTGTTTCTTGAATCGTTGAAGCTGGTTGTCCGCCCTAATCACCCGCTACTTCAGGAGAACGTAACG
CTAAGCCGGGTGCTGGAATGGCCGGTCGTTGTATCACCAGAAGGCACTGCGCCACGCCAGCATTCAGATGCATTAGTGCA
GAGCCAGGGCTGTAAAATTCCTTCGGGTTGTATCGAAACGCTGTCTACTTCGCTATCTCGTCAACTTACCGTTGAATACG
ATTACGTGTGGTTTGTCCCTTCTGGCGCTGTAAAAGACGACCTGCGTCATGCCACGCTGGTGGCCCTGCCTGTTCCGGGA
CATGGTGCAGGCGAACCGATTGGAATACTGACCCGCGTAGATGCGACGTTCTCTTCTGGTTGCCAGTTGATGATTAACGC
TATTCGAAAATCAATGCCGTTCTGA

Upstream 100 bases:

>100_bases
CATCCGCCGTGATGCTGTTCGCCATAGTGTCTGCCTCCAGTGGTCAGTAATCTGGAGTGTAGGTAACCGCATTCACTCTG
GCGGGAAGAATTTACAAACT

Downstream 100 bases:

>100_bases
AAGGTGAAGGGATCTGTCGATCCCTCCTTGAACATTTTCACACCGTAGCGAAACTAACTGGTTCACCCGCTCCGCGAGGT
TCTGCCGACACAGAATGTTT

Product: putative LYSR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MISPRKHQYYPFCCNIIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAE
TLNLSQPALSNTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVVRVGALPTAAL
GILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQENVT
LSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSTSLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPG
HGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF

Sequences:

>Translated_354_residues
MISPRKHQYYPFCCNIIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAE
TLNLSQPALSNTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVVRVGALPTAAL
GILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQENVT
LSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSTSLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPG
HGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF
>Mature_354_residues
MISPRKHQYYPFCCNIIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAE
TLNLSQPALSNTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVVRVGALPTAAL
GILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQENVT
LSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSTSLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPG
HGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=307, Percent_Identity=99.0228013029316, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI1787601, Length=264, Percent_Identity=28.4090909090909, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=33.0396475770925, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788887, Length=181, Percent_Identity=33.7016574585635, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=32.8205128205128, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1790262, Length=219, Percent_Identity=29.2237442922374, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=22.8187919463087, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788748, Length=179, Percent_Identity=29.0502793296089, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790399, Length=302, Percent_Identity=23.1788079470199, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789204, Length=185, Percent_Identity=28.6486486486486, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI2367136, Length=150, Percent_Identity=30.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=211, Percent_Identity=30.3317535545024, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38706; Mature: 38706

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISPRKHQYYPFCCNIIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEKNSLFSQRIRL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHLHTFVAVAQQGTLGRAAETLNLSQPALSNTLNELEQLTGARLFERGRQGAQLTLPGEQ
HHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHH
FLTHAVRVLDAINTAGQSLHRKEGLNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEE
VATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQENVT
EEECCCCEEEEECCCCCEEEECCCCCCCHHHHCCCCEEEEEECCCEEECCCCCCHHCCCH
LSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSTSLSRQLTVEYDYVWFVP
HHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEEEEEEC
SGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF
CCCHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MISPRKHQYYPFCCNIIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEKNSLFSQRIRL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHLHTFVAVAQQGTLGRAAETLNLSQPALSNTLNELEQLTGARLFERGRQGAQLTLPGEQ
HHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHH
FLTHAVRVLDAINTAGQSLHRKEGLNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEE
VATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQENVT
EEECCCCEEEEECCCCCEEEECCCCCCCHHHHCCCCEEEEEECCCEEECCCCCCHHCCCH
LSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSTSLSRQLTVEYDYVWFVP
HHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEEEEEEC
SGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF
CCCHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]