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The map label for this gene is yeaM [H]

Identifier: 30062860

GI number: 30062860

Start: 1401670

End: 1402056

Strand: Reverse

Name: yeaM [H]

Synonym: S1430

Alternate gene names: 30062860

Gene position: 1402056-1401670 (Counterclockwise)

Preceding gene: 30062862

Following gene: 30062859

Centisome position: 30.48

GC content: 43.67

Gene sequence:

>387_bases
ATGGGGGTGAAAATGTCACTTGAACTCCCTTGGCCAAATGATGAGCGGCTACAGCAGCTTTGTGAGAATTTGCTAAACAA
CCAAGGGTATCTGCCAACACTGGATAATCTAGCGGATAAAATTAACGTCAGTAGCCGTACACTCATGCGCTTATTTGTTA
AAGAGACGGGATTAACATTTCGCCACTGGGTTCAGCAAATGCACGTTATTTCTGCAGTGACGCTTCTTGATGATGGATAT
TCGTTGACCAAAATTGCCCATCGTCTGGGCTATGCCTCAGCTGAATCGTTCGGCAATATGTTTAAGCGTCGAACGGGCTA
CTCGCCCGGTAAATTTACTCGTCGATTAACGATGCATAATTATGCAATCACAAGACAAATGATTTAA

Upstream 100 bases:

>100_bases
ACTAATTGCAATTAACCAACTTCCACCGTCGCAAAGTACCACAGATAAACAACAGTTACGTTTTTCAGCCGTCGAGACAC
TGATACTTCAGGAAATAAAA

Downstream 100 bases:

>100_bases
CTTATATTTTCGTGAAATCTGTCACTGAAGAAAATTGGCAACGGATGGGTAAAACCGTTATAACACTGTCACCGGTCACC
AGGACCCCAGGCCGGATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MGVKMSLELPWPNDERLQQLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTLLDDGY
SLTKIAHRLGYASAESFGNMFKRRTGYSPGKFTRRLTMHNYAITRQMI

Sequences:

>Translated_128_residues
MGVKMSLELPWPNDERLQQLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTLLDDGY
SLTKIAHRLGYASAESFGNMFKRRTGYSPGKFTRRLTMHNYAITRQMI
>Mature_127_residues
GVKMSLELPWPNDERLQQLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTLLDDGYS
LTKIAHRLGYASAESFGNMFKRRTGYSPGKFTRRLTMHNYAITRQMI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=84, Percent_Identity=46.4285714285714, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 14809; Mature: 14678

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVKMSLELPWPNDERLQQLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTF
CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHH
RHWVQQMHVISAVTLLDDGYSLTKIAHRLGYASAESFGNMFKRRTGYSPGKFTRRLTMHN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YAITRQMI
HHHHHHCC
>Mature Secondary Structure 
GVKMSLELPWPNDERLQQLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTF
CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHH
RHWVQQMHVISAVTLLDDGYSLTKIAHRLGYASAESFGNMFKRRTGYSPGKFTRRLTMHN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YAITRQMI
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]