Click here to switch to the map view.

The map label for this gene is ipaH_3

Identifier: 30062708

GI number: 30062708

Start: 1227396

End: 1228004

Strand: Reverse

Name: ipaH_3

Synonym: S1268

Alternate gene names: NA

Gene position: 1228004-1227396 (Counterclockwise)

Preceding gene: 161486502

Following gene: 30062705

Centisome position: 26.7

GC content: 45.98

Gene sequence:

>609_bases
ATGAAGTATCTCAGCCCGCAAAAATTCAGCTGGGGTGATGCCCCCTGGCAGATCATTGACCTCAGTATCGCGGGCAAAGT
GAACATACAGGTGGACAACAATACCATCATCACGTTGGGGACTCGTCTGAATCAGCAACATAACGAGTTCATGATGGTCG
CCAAATGGTGCGAATGGGCTATACAGCAGGATGGTTTGCAAGAAAACCTGCAAAAAAACCTGTACGAAATCCTGGAAGAA
AACCAGCAAAACAAACAGTCAGAAATTCCCCAAGAAGACCTGAAAGAAAGTCTGGAAGAAATCAAGGAAAATATCCTGGA
AGAAAACCTGCCAGCAAGCCGGATTGAAAACCGGGCAGAAGCATTGCGCAGAATGAAGGAATGTCTCATTACAAGACGGA
GTATGCTCAATCTTAGCAACCTGGGATTGACTTCACTCCCTGAGAATTTGCCTCCACATCTGATTGAATTTTACTGCAGT
AAAAACGTGTTGACCGCGTTACCGAAGGTGATGCCAAAGTGGCTGCTGGTGCTTGACTGTACAGATAACGTCTTGATCTT
GTTACCCGAAGGTGCAGCCCTCAAAACTGATGGTACTGAAGTGCTATGA

Upstream 100 bases:

>100_bases
ACATCTGCCCATTCGCCCCCGCCATTCCCCCATCTTCCGTTAACCCAGGCGTACGACGCCCGCCAGGGCGGCTCTTCTCA
AGAATCAAATTTTGCAGAAC

Downstream 100 bases:

>100_bases
AAACAGTATTATCTGGGCTGCCTGAGCTGTCGACTAACCTGAGAGTGATTAACTGTTCTGAAAACTTCTTGCAATTTTTA
CCGCCGTCGATGCCCCAGTA

Product: invasion plasmid antigen fragment

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MKYLSPQKFSWGDAPWQIIDLSIAGKVNIQVDNNTIITLGTRLNQQHNEFMMVAKWCEWAIQQDGLQENLQKNLYEILEE
NQQNKQSEIPQEDLKESLEEIKENILEENLPASRIENRAEALRRMKECLITRRSMLNLSNLGLTSLPENLPPHLIEFYCS
KNVLTALPKVMPKWLLVLDCTDNVLILLPEGAALKTDGTEVL

Sequences:

>Translated_202_residues
MKYLSPQKFSWGDAPWQIIDLSIAGKVNIQVDNNTIITLGTRLNQQHNEFMMVAKWCEWAIQQDGLQENLQKNLYEILEE
NQQNKQSEIPQEDLKESLEEIKENILEENLPASRIENRAEALRRMKECLITRRSMLNLSNLGLTSLPENLPPHLIEFYCS
KNVLTALPKVMPKWLLVLDCTDNVLILLPEGAALKTDGTEVL
>Mature_202_residues
MKYLSPQKFSWGDAPWQIIDLSIAGKVNIQVDNNTIITLGTRLNQQHNEFMMVAKWCEWAIQQDGLQENLQKNLYEILEE
NQQNKQSEIPQEDLKESLEEIKENILEENLPASRIENRAEALRRMKECLITRRSMLNLSNLGLTSLPENLPPHLIEFYCS
KNVLTALPKVMPKWLLVLDCTDNVLILLPEGAALKTDGTEVL

Specific function: Unknown

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23212; Mature: 23212

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLSPQKFSWGDAPWQIIDLSIAGKVNIQVDNNTIITLGTRLNQQHNEFMMVAKWCEWA
CCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHH
IQQDGLQENLQKNLYEILEENQQNKQSEIPQEDLKESLEEIKENILEENLPASRIENRAE
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALRRMKECLITRRSMLNLSNLGLTSLPENLPPHLIEFYCSKNVLTALPKVMPKWLLVLDC
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEEEEC
TDNVLILLPEGAALKTDGTEVL
CCCEEEEECCCCEECCCCCCCC
>Mature Secondary Structure
MKYLSPQKFSWGDAPWQIIDLSIAGKVNIQVDNNTIITLGTRLNQQHNEFMMVAKWCEWA
CCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHH
IQQDGLQENLQKNLYEILEENQQNKQSEIPQEDLKESLEEIKENILEENLPASRIENRAE
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALRRMKECLITRRSMLNLSNLGLTSLPENLPPHLIEFYCSKNVLTALPKVMPKWLLVLDC
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEEEEC
TDNVLILLPEGAALKTDGTEVL
CCCEEEEECCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA