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The map label for this gene is ycfR

Identifier: 30062645

GI number: 30062645

Start: 1159752

End: 1159964

Strand: Direct

Name: ycfR

Synonym: S1196

Alternate gene names: 30062645

Gene position: 1159752-1159964 (Clockwise)

Preceding gene: 30062643

Following gene: 30062649

Centisome position: 25.22

GC content: 47.42

Gene sequence:

>213_bases
ATGTCATTTGCCAACTTTGCGGCTGTCGAAGTTCAGTCAACGCCAGAAGGCCAACAAAAAGTCGGTACTATCAGTGCTAA
CGCGGGGACAAATCTGGGATCGCTGGAAGAGCAGCTGGCGCAAAAAGCGGATGAGATGGGCGCAAAATCTTTCCGTATTA
CTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAA

Upstream 100 bases:

>100_bases
TTATCGATCGTTAAGTAATTTCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCTCATCG
CTGCGGCGATTTTAAGCTCC

Downstream 100 bases:

>100_bases
GCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTTATCCAGG
ATTTACAGAGTTTGTGGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSFANFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK

Sequences:

>Translated_70_residues
MSFANFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK
>Mature_69_residues
SFANFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK

Specific function: May be involved in the regulation of biofilm formation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BhsA/McbA family [H]

Homologues:

Organism=Escherichia coli, GI1787355, Length=70, Percent_Identity=98.5714285714286, Blast_Score=142, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010854 [H]

Pfam domain/function: PF07338 DUF1471 [H]

EC number: NA

Molecular weight: Translated: 7300; Mature: 7169

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFANFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPN
CCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
TLHGTAVIYK
CCCCEEEEEC
>Mature Secondary Structure 
SFANFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPN
CCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
TLHGTAVIYK
CCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]