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The map label for this gene is ymdC

Identifier: 30062571

GI number: 30062571

Start: 1086491

End: 1087972

Strand: Direct

Name: ymdC

Synonym: S1116

Alternate gene names: 30062571

Gene position: 1086491-1087972 (Clockwise)

Preceding gene: 30062570

Following gene: 30062573

Centisome position: 23.62

GC content: 50.54

Gene sequence:

>1482_bases
ATGATGAAGAAAACGCCCACCTCTACGAAAGACTCCTTACCCAACAAGGAGATGAATGATTTGCCCCGGCTGGCGAGCGC
GGTGCTGCCACTGTGTTCGCAACATCCCGGTCAGTGTGGTCTTTTCCCTCTGGAGAAAAGTCTGGATGCGTTTGCCGCCC
GGTATCGTCTGGCCGAAATGGCAGAGCATACGCTGGATGTTCAGTATTACATCTGGCAGGACGATATGTCGGGGCGGTTA
CTGTTTTCCGCCCTGTTAGCCGCAGCAAAGCGTGGCGTTCGCGTCCGTTTGTTGCTGGACGACAACAATACGCCCGGACT
TGACGACATTTTGCGCTTGCTTGACAGTCATCCACGCATTGAAGTCCGGCTTTTTAATCCTTTCTCGTTTCGCTTGCTAC
GTCCGCTTGGATATATCACCGACTTTTCCCGTCTCAATCGCCGGATGCACAATAAAAGTTTCACTGTCGATGGCGTGGTT
ACCCTAGTGGGAGGACGAAATATTGGTGATGCCTATTTTGGTGCAGGGGAAGAGCCACTTTTTTCGGATTTAGATGTCAT
GGCAATAGGCCCCGTGGTAGAGGATGTTGCCGATGATTTCGCCCGCTACTGGTATTGCAAATCGGTTTCACCCTTACAGC
AGGTGCTGGATGTCCCGGAAGGTGAAATGGCGGATCGCATCGAGTTACCCGCCTCCTGGCATAACGATGCCATGACGCAT
CGTTATTTACGCAAAATGGAATCCAGTCCATTTATAAATCATCTGGTTGATGGAACGTTGCCGCTTATCTGGGCGAAGAC
ACGTTTATTAAGTGATGATCCGGCGAAAGGGGAGGGCAAGGCAAAACGGCATTCACTGTTACCGCAGCGCCTGTTCGATA
TCATGGGCTCACCCAGTGAACGCATCGATATTATCTCTTCCTATTTTGTACCGACACGCGCAGGTGTGGCGCAACTCTTA
CGGATGGTGAGAAAAGGGGTAAAGATTGCGATCCTAACCAATTCTCTTGCCGCTAACGATGTTGCTGTCGTCCATGCCGG
ATACGCGCGCTGGCGCAAAAAATTGCTCCGCTATGGCGTGGAATTATATGAACTCAAGCCGACGCGTGAACAAAGCAGTA
CGTTACACGATCGCGGCATAACCGGTAATTCCGGTGCCAGCCTGCATGCTAAAACTTTTAGCATCGATGGTAAAACGGTG
TTTATCGGCTCTTTCAATTTCGATCCGCGTTCAACATTGCTCAATACTGAAATGGGCTTCGTGATAGAGAGCGAAACGCT
GGCACAGTTAATTGATAAACGCTTTATTCAGAGCCAGTACGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGA
TCAACTGGGTTGATCGTCATGCAAAGAAAGAGGTTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATG
GTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAA

Upstream 100 bases:

>100_bases
TATAGTTACCCTCGTGCGGCAGCGGCTGAAATCGCAGTTAAAACCGTTTCAGAATTTATTACCCGTCACGCTTTACCCGA
ACAGGTATACTTTGTCTGTT

Downstream 100 bases:

>100_bases
ATGTGGCTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTAACAACCGGTTTACCAGAGAACAAAAACTTCAGTAACGGG
ATGCGTAAATGAATTTCATA

Product: putative synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRL
LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTH
RYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTV
FIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEVILKKEPATSFWKRVM
VRLASILPVEWLL

Sequences:

>Translated_493_residues
MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRL
LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTH
RYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTV
FIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEVILKKEPATSFWKRVM
VRLASILPVEWLL
>Mature_493_residues
MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRL
LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTH
RYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTV
FIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEVILKKEPATSFWKRVM
VRLASILPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=473, Percent_Identity=99.5771670190275, Blast_Score=969, Evalue=0.0,
Organism=Escherichia coli, GI1787007, Length=399, Percent_Identity=23.0576441102757, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55913; Mature: 55913

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEM
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
AEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRI
HHHHCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCE
EVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEEECCCCCCHHHCCCCCCCC
FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTH
CCCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHH
RYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSE
HHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
RIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGV
HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCC
ELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGF
EEEEECCCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCE
VIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEVILKKEPATSFWKRVM
EECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHEEECCCHHHHHHHHH
VRLASILPVEWLL
HHHHHHCCHHHCC
>Mature Secondary Structure
MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEM
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
AEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRI
HHHHCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCE
EVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEEECCCCCCHHHCCCCCCCC
FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTH
CCCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHH
RYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSE
HHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
RIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGV
HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCC
ELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGF
EEEEECCCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCE
VIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEVILKKEPATSFWKRVM
EECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHEEECCCHHHHHHHHH
VRLASILPVEWLL
HHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]