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The map label for this gene is ymdA [H]

Identifier: 30062569

GI number: 30062569

Start: 1085610

End: 1085921

Strand: Direct

Name: ymdA [H]

Synonym: S1114

Alternate gene names: 30062569

Gene position: 1085610-1085921 (Clockwise)

Preceding gene: 30062568

Following gene: 30062570

Centisome position: 23.6

GC content: 44.23

Gene sequence:

>312_bases
ATGTTCAGACCTTTTTTAGACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCAGGAAGCACCGCGCA
AGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGA
ACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAA
ATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGAACATCGAATATAACTAA

Upstream 100 bases:

>100_bases
AAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAA
TCATTGAGGAAATAGAATAA

Downstream 100 bases:

>100_bases
GTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGG
TGTAAGGAGGCGTTATGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MFRPFLDSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQ
IASVKVQYLDKQKKLAVMNIEYN

Sequences:

>Translated_103_residues
MFRPFLDSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQ
IASVKVQYLDKQKKLAVMNIEYN
>Mature_103_residues
MFRPFLDSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQ
IASVKVQYLDKQKKLAVMNIEYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To the N-terminal of the fimA/papA family of fimbria proteins [H]

Homologues:

Organism=Escherichia coli, GI1787281, Length=103, Percent_Identity=98.0582524271845, Blast_Score=209, Evalue=3e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11167; Mature: 11167

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRPFLDSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGS
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCCCCCCCCCCEEECCCCCCC
IPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
CCCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCEEEEEEECC
>Mature Secondary Structure
MFRPFLDSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGS
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCCCCCCCCCCEEECCCCCCC
IPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
CCCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]