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The map label for this gene is ybjE

Identifier: 30062358

GI number: 30062358

Start: 858011

End: 858958

Strand: Reverse

Name: ybjE

Synonym: S0870

Alternate gene names: 30062358

Gene position: 858958-858011 (Counterclockwise)

Preceding gene: 161486523

Following gene: 161486524

Centisome position: 18.68

GC content: 48.31

Gene sequence:

>948_bases
GTGTGTCATCGCGCATTTCGACTTCTTCTTTGCAAGGACTGGATTTTCATGTTTTCTGGGCTGTTAATCATTCTGGTTCC
CCTGATTGTGGGTTACCTCATTCCGCTTCGCCAACAAGCTGCGTTAAAAGCTATTAATCAGCTATTAAGCTGGATGGTTT
ACCTTATTCTCTTTTTTATGGGTATCAGTCTGGCGTTTCTCGATAACCTCGCCAGTAACCTGTTGGCGATTCTGCATTAT
TCTGCCGTCAGTATTACCGTTATTTTACTGTGTAATATTGCCGCCCTGATGTGGCTGGAGCGAGGCCTGCCGTGGCGCAA
CCACCATCAGCAAGAAAAACTCCCGTCGCGTATTGCGATGGCGCTGGAGTCGCTAAAACTGTGCGGCGTAGTAGTGATTG
GTTTTGCCATTGGTCTGAGTGGACTGGCTTTCTTACAACACGCGACCGAAGCCAGTGAATACACGTTAATTTTGCTACTT
TTCCTCGTTGGTATTCAGTTGCGCAATAATGGCATGACCTTAAAGCAGATTGTCCTTAATCGCCGGGGAATGATTGTCGC
CGTGGTGGTGGTTGTCAGTTCATTAATTGGTGGTTTAATTAACGCCTTTATTCTTGATCTCCCCATCAATACCGCGCTGG
CAATGGCCTCCGGTTTCGGCTGGTATTCTCTTTCCGGTATTTTATTGACCGAATCTTTTGGTCCGGTAATCGGGAGCGCG
GCGTTTTTTAATGATCTGGCCCGTGAACTGATTGCTATTATGTTGATCCCTGGGCTGATTCGCCGCAGCCGCTCTACTGC
ACTGGGCTTATGCGGTGCCACATCAATGGATTTCACCCTGCCCGTTCTTCAACGTACTGGCGGGCTGGATATGGTCCCGG
CGGCAATTGTTCACGGTTTTATTCTTAGCCTGTTAGTGCCGATCCTCATCGCCTTTTTCTCTGCGTAA

Upstream 100 bases:

>100_bases
TGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATCCCCCTCTGATGCATAACATTTCCTTTTAATTGCAACTTTAC
TCGCCCTTCCGCTTTCAGTA

Downstream 100 bases:

>100_bases
TACCTCTCTGGCGGTAGTTCCCTGCCGCCAAAATTGCGCTAAATCAATCTCCCTTAAAGTTGCATGAAAAATCCCTTTTA
TCCCCGCGTTAAGCGTCTTA

Product: putative surface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MCHRAFRLLLCKDWIFMFSGLLIILVPLIVGYLIPLRQQAALKAINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHY
SAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLL
FLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSA
AFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA

Sequences:

>Translated_315_residues
MCHRAFRLLLCKDWIFMFSGLLIILVPLIVGYLIPLRQQAALKAINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHY
SAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLL
FLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSA
AFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>Mature_315_residues
MCHRAFRLLLCKDWIFMFSGLLIILVPLIVGYLIPLRQQAALKAINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHY
SAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLL
FLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSA
AFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA

Specific function: Unknown

COG id: COG2431

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1452 [H]

Homologues:

Organism=Escherichia coli, GI87081795, Length=299, Percent_Identity=99.6655518394649, Blast_Score=581, Evalue=1e-167,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005642
- ProDom:   PD022789 [H]

Pfam domain/function: PF03956 DUF340 [H]

EC number: NA

Molecular weight: Translated: 34347; Mature: 34347

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCHRAFRLLLCKDWIFMFSGLLIILVPLIVGYLIPLRQQAALKAINQLLSWMVYLILFFM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
RRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHEECCCCHHHHHH
AFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGF
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
ILSLLVPILIAFFSA
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MCHRAFRLLLCKDWIFMFSGLLIILVPLIVGYLIPLRQQAALKAINQLLSWMVYLILFFM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
RRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHEECCCCHHHHHH
AFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGF
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
ILSLLVPILIAFFSA
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]