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The map label for this gene is ybgS

Identifier: 30062091

GI number: 30062091

Start: 568749

End: 569129

Strand: Direct

Name: ybgS

Synonym: S0559

Alternate gene names: 30062091

Gene position: 568749-569129 (Clockwise)

Preceding gene: 30062089

Following gene: 30062092

Centisome position: 12.37

GC content: 50.13

Gene sequence:

>381_bases
ATGAAAATGACAAAACTGGCCACATTATTTCTGACTGCCACTCTAAGCCTTGCCAGCGGTGCCGCACTGGCTGCCGATAG
CGGAGCGCAAACTAATAACGGCCAGGCAAACGCCGCAGCTGATGCGGGCCAGGTAGCCCCTGACGCCCGTGAAAATGTCG
CGCCAAATAACGTCGACAATAACGGGGTAAATACCGGTTCTGGCGGCACAATGCTGCATTCGGATGGTTCTTCAATGAAC
AATGACGGAATGACCAAAGATGAAGAGCACAAGAACACCATGTGCAAAGATGGTCGATGTCCGGATATCAATAAAAAGGT
ACAAACCGGTGATGGCATCAATAATGATGTCGATACCAAAACCGACGGTACCACGCAGTAA

Upstream 100 bases:

>100_bases
TCATAAACTGGCTGAAATCTTAAACCAATGCCTTATATTCACCTGCAAATGCACTGTTGGAAGAGGTTATCCGACATAAC
GACCATAACAGGAGCATCCT

Downstream 100 bases:

>100_bases
CCCTGCAAAATAGCCAATAATGGGAGAGCGGAGTCTCTCCCTTTTAATTTTTCACTTCTAAAAGCAGTATGATGTCATAA
AGTTAAGTGAGAATAATTAA

Product: putative homeobox protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMN
NDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ

Sequences:

>Translated_126_residues
MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMN
NDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ
>Mature_126_residues
MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMN
NDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786968, Length=126, Percent_Identity=100, Blast_Score=251, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBGS_ECOLI (P0AAV6)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   A64811
- RefSeq:   AP_001384.1
- RefSeq:   NP_415274.1
- ProteinModelPortal:   P0AAV6
- STRING:   P0AAV6
- EnsemblBacteria:   EBESCT00000002899
- EnsemblBacteria:   EBESCT00000015799
- GeneID:   945356
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0736
- KEGG:   eco:b0753
- EchoBASE:   EB3427
- EcoGene:   EG13663
- eggNOG:   NOG12064
- GeneTree:   EBGT00050000011253
- HOGENOM:   HBG086571
- OMA:   NNGQANS
- ProtClustDB:   CLSK879746
- BioCyc:   EcoCyc:G6394-MONOMER
- Genevestigator:   P0AAV6
- InterPro:   IPR020363
- ProDom:   PD079292

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12872; Mature: 12872

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDN
CCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTK
CCCCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TDGTTQ
CCCCCC
>Mature Secondary Structure
MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDN
CCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTK
CCCCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TDGTTQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503