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The map label for this gene is ybaO

Identifier: 30061948

GI number: 30061948

Start: 403190

End: 403735

Strand: Direct

Name: ybaO

Synonym: S0398

Alternate gene names: 30061948

Gene position: 403190-403735 (Clockwise)

Preceding gene: 30061947

Following gene: 30061949

Centisome position: 8.77

GC content: 49.82

Gene sequence:

>546_bases
GTGGTGTTTAAACCGCACAGAATAAATTGTCGCGATTTCACCTTTAAAATAGAATTAAAAGAGAAAAAAATTCTCCGTGG
AAGGGCTATGTTAGATAAAATTGACCGTAAGCTGCTGGCCTTACTGCAGCAGGATTGCACCCTCTCTTTGCAGGCACTGG
CTGAAGCCGTTAATCTGACAACCACCCCCTGCTGGAAGCGCCTGAAACGGCTGGAGGACGACGGTATCCTTATCGGCAAA
GTCGCCCTGCTGGATCCGGAAAAAATAGGCCTCGGCCTGACCGCCTTTGTGCTGATAAAAACGCAACATCACAGCAGCGA
ATGGTATTGCCGCTTTGTCACGGTGGTTACCGAAATGCCAGAAGTGCTGGGGGTCTGGCGCATGGCTGGTGAATACGATT
ATCTGATGCGCGTCCAGGTTGCCGACATGAAACGCTACGACGAGTTTTATAAGCGTCTGGTAAACAGCGTGCCGGGGCTG
TCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAA

Upstream 100 bases:

>100_bases
GGACTATCCACATCTACCTTATTCCCCCGAATAACGAGATCCCTTCCAGCACCGGGCAATTGCCCGGTTTTTTTTTGCGT
TGAATTTGTCATTTTGTGCC

Downstream 100 bases:

>100_bases
ATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAAGCTGGTATTTCCGTCGGGAATGGCGTCGC
TATCTTGGGGCTGTCGCCTT

Product: putative LRP-like transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MVFKPHRINCRDFTFKIELKEKKILRGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGK
VALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGVWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL
SDVTSSFAMEQIKYTTSLPIE

Sequences:

>Translated_181_residues
MVFKPHRINCRDFTFKIELKEKKILRGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGK
VALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGVWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL
SDVTSSFAMEQIKYTTSLPIE
>Mature_181_residues
MVFKPHRINCRDFTFKIELKEKKILRGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGK
VALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGVWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL
SDVTSSFAMEQIKYTTSLPIE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=99.3421052631579, Blast_Score=312, Evalue=8e-87,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=33.112582781457, Blast_Score=98, Evalue=4e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 20947; Mature: 20947

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFKPHRINCRDFTFKIELKEKKILRGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLT
CCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
TTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMP
CCHHHHHHHHCCCCCEEEEEEEEECHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHH
EVLGVWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPI
HHHHHHHHCCCCCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
E
C
>Mature Secondary Structure
MVFKPHRINCRDFTFKIELKEKKILRGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLT
CCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
TTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMP
CCHHHHHHHHCCCCCEEEEEEEEECHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHH
EVLGVWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPI
HHHHHHHHCCCCCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]