| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yaiH
Identifier: 30061811
GI number: 30061811
Start: 263399
End: 264556
Strand: Direct
Name: yaiH
Synonym: S0259
Alternate gene names: 30061811
Gene position: 263399-264556 (Clockwise)
Preceding gene: 30061808
Following gene: 30061817
Centisome position: 5.73
GC content: 54.75
Gene sequence:
>1158_bases TTGAAACGTAGTCTGCTTTTTTCTGCCGTGCTGTGTGCGGCGTCATTGACCTCCGTCCATGCGGCGCAGCCGATCACTGA ACCGGAGTTTGCCTCTGATATTGTCGATCGTTATGCCGATCATATTTTTTACGGCAGCGGTGCCACGGGGATGGCGCTGG TTGTTATCGACGGTAACCAGCGCGTCTTTCGTAGTTATGGTGAAACGCGACCTGGTAATAACGTTCGCCCGCAGCTGGAT TCGGTCGTGCGTATTGCTTCCCTCACCAAACTAATGACCAGTGAAATGCTGGTGAAATTGCTCGACCAGGGGACCGTAAA GTTAAACGATCCGCTAAGTAAATATGCTCCGCCAGGCGCACGCGTGCCGACCTACAATGGGACGCCCATTACCCTAGTGA ATCTGGCAACCCATACCAGCGCCCTGCCCCGTGAACAGCCCGGTGGCGCGGCACATCGTCCGGTGTTTGTCTGGCCAACG CGCGAGCAACGCTGGAAATACCTTTCTACGGCGAAGCTGAAAGCCGCGCCAGGCAGTCAGGCGGCGTACTCTAACCTTGC GTTCGACCTGCTGGCAGATGCACTGGCGAATGCGTCCGGCAAGCCTTATACCCAGTTGTTTGAAGAGCAGATTACCCATC CATTGGGGATGAAAGACACCACCTACACCCCCTCACCGGATCAGTGCCGCCGTTTAATGGTTGCTGAGCGCGGTGCCAGT CCGTGCAATAACACGCTGGCGGCAATTGGCAGCGGCGGCGTCTATTCCACGCCTGGCGATATGATGCGCTGGATGCAGCA GTATTTGTCATCTGATTTTTATCAGCGCAGTAACCAGGCAGATCGCATGCAGACGTTGATTTATCAGCGCGCGCAGTTTA CGAAAGTGATTGGCATGGATGTCCCCGGCAAAGCGGATGCGCTTGGTTTAGGCTGGGTATATATGGCCCCGAAAGAGGGT CGTCCGAGGATTATTCAGAAGACAGGCGGTGGTGGCGGTTTCATTACCTATATGGCGATGATCCCGCAGAAGAATATTGG CGCGTTTGTGGTGGTCACTCGTTCGCCGTTGACGCGCTTTAAAAATATGAGCGATGGCATCAATGATCTGGTGACCGAGC TAAGCGGGAATAAACCGTTGGTTATCCCCGCATCCTGA
Upstream 100 bases:
>100_bases CGTTTTTAACACTATTATTGCACTAATTCGCCCTTTGCAATCCATCAATGAGTAGTATAAATACGCTCAGTTACCTTCAT TCAATCTATGGACACCACCG
Downstream 100 bases:
>100_bases TTAATACTCTGAAGGCAAACGGTTGATAGCGACCAGTTTGCCTTTATTCATTTCGATATAGCCGCCTTTACGCAAAGCAG CGAGAACTTCTGCGACGACA
Product: beta-lactam binding protein AmpH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLD SVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITHPLGMKDTTYTPSPDQCRRLMVAERGAS PCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEG RPRIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS
Sequences:
>Translated_385_residues MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLD SVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITHPLGMKDTTYTPSPDQCRRLMVAERGAS PCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEG RPRIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS >Mature_385_residues MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLD SVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITHPLGMKDTTYTPSPDQCRRLMVAERGAS PCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEG RPRIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS
Specific function: Binds penicillin and contributes to the normal morphology [H]
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the beta-lactamase family [H]
Homologues:
Organism=Homo sapiens, GI239747261, Length=364, Percent_Identity=25, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI239752721, Length=364, Percent_Identity=25, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI239741085, Length=364, Percent_Identity=25, Blast_Score=77, Evalue=3e-14, Organism=Escherichia coli, GI1786574, Length=385, Percent_Identity=99.4805194805195, Blast_Score=791, Evalue=0.0, Organism=Escherichia coli, GI1790593, Length=372, Percent_Identity=23.6559139784946, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87082101, Length=245, Percent_Identity=25.7142857142857, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 41930; Mature: 41930
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQ CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCH RVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHCCCCC RVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQ CCCCCCCCCEEEEEECHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHEEECCCCCH AAYSNLAFDLLADALANASGKPYTQLFEEQITHPLGMKDTTYTPSPDQCRRLMVAERGAS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC PCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMD CCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC VPGKADALGLGWVYMAPKEGRPRIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRF CCCCCCCEEEEEEEECCCCCCCCEEEECCCCCHHEEHEECCCCCCCCEEEEEECCHHHHH KNMSDGINDLVTELSGNKPLVIPAS HHHCCCHHHHHHHHCCCCCEEEECC >Mature Secondary Structure MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQ CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCH RVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHCCCCC RVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQ CCCCCCCCCEEEEEECHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHEEECCCCCH AAYSNLAFDLLADALANASGKPYTQLFEEQITHPLGMKDTTYTPSPDQCRRLMVAERGAS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC PCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMD CCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC VPGKADALGLGWVYMAPKEGRPRIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRF CCCCCCCEEEEEEEECCCCCCCCEEEECCCCCHHEEHEECCCCCCCCEEEEEECCHHHHH KNMSDGINDLVTELSGNKPLVIPAS HHHCCCHHHHHHHHCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]