Click here to switch to the map view.

The map label for this gene is yafE

Identifier: 30061762

GI number: 30061762

Start: 223972

End: 224592

Strand: Direct

Name: yafE

Synonym: S0204

Alternate gene names: 30061762

Gene position: 223972-224592 (Clockwise)

Preceding gene: 30061761

Following gene: 30061765

Centisome position: 4.87

GC content: 49.28

Gene sequence:

>621_bases
ATGGGCTGCGGAGCAGGGCATGCCAGCTTTGTTGCTGCGCAAAACGTGAGCGCGGTGGTGGCGTATGACTTATCTGCCCA
AATGCTGGATGTCGTGGCACAAGCTGCCGAAGCCCGGCAACTGAAAAATATCACCACCCGCCAGGGATATGCCGAAAGTC
TGCCATTTGCCGATAACGCATTTGATATTGTTATCAGCCGTTATTCTGCCCATCACTGGCATGATGTTGGTGCAGCACTG
CGTGAAGTGAACCGGATATTGAAACCTGGCGGTAGGATGATTGTGATGGACGTAATGTCTCCGGGTCATCCAGTGCGCGA
CATCTGGTTACAGACGGTAGAAGCATTACGCGATACCTCTCACGTACGAAACTACGCCAGCGGTGAGTGGTTGAGGTTAA
TCAATGAAGCCAATCTGATAGTTGATAATTTAATTACAGATAAGTTACCGCTGGAATTTTGTTCATGGGTCGCGAGAATG
CGTACGCCAGAAGCGTTAGTAGACGCTATTCGCATTTACCAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTT
GCAGAATGACGGCTCTTTCACCAGTGATATCATCATGGTAGAAGCACATAAAGCGGCATAA

Upstream 100 bases:

>100_bases
AGCCTGCGAATATCTGACCAGTACCGTACATGCATCCGGACGAGATTTACAGCGCCTGGCGGTGCGTCTGGCTGATTATC
CTGGTGCAAGTGCACTTGAT

Downstream 100 bases:

>100_bases
ATAAAAAAGGCACCGGGGGAATCGGTACCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAA
CAACGTCAGCTTGTCGCCTG

Product: putative biotin synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MGCGAGHASFVAAQNVSAVVAYDLSAQMLDVVAQAAEARQLKNITTRQGYAESLPFADNAFDIVISRYSAHHWHDVGAAL
REVNRILKPGGRMIVMDVMSPGHPVRDIWLQTVEALRDTSHVRNYASGEWLRLINEANLIVDNLITDKLPLEFCSWVARM
RTPEALVDAIRIYQQSASTEVRTYFALQNDGSFTSDIIMVEAHKAA

Sequences:

>Translated_206_residues
MGCGAGHASFVAAQNVSAVVAYDLSAQMLDVVAQAAEARQLKNITTRQGYAESLPFADNAFDIVISRYSAHHWHDVGAAL
REVNRILKPGGRMIVMDVMSPGHPVRDIWLQTVEALRDTSHVRNYASGEWLRLINEANLIVDNLITDKLPLEFCSWVARM
RTPEALVDAIRIYQQSASTEVRTYFALQNDGSFTSDIIMVEAHKAA
>Mature_205_residues
GCGAGHASFVAAQNVSAVVAYDLSAQMLDVVAQAAEARQLKNITTRQGYAESLPFADNAFDIVISRYSAHHWHDVGAALR
EVNRILKPGGRMIVMDVMSPGHPVRDIWLQTVEALRDTSHVRNYASGEWLRLINEANLIVDNLITDKLPLEFCSWVARMR
TPEALVDAIRIYQQSASTEVRTYFALQNDGSFTSDIIMVEAHKAA

Specific function: Unknown

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786404, Length=205, Percent_Identity=93.6585365853659, Blast_Score=394, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 22814; Mature: 22683

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCGAGHASFVAAQNVSAVVAYDLSAQMLDVVAQAAEARQLKNITTRQGYAESLPFADNA
CCCCCCCHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCH
FDIVISRYSAHHWHDVGAALREVNRILKPGGRMIVMDVMSPGHPVRDIWLQTVEALRDTS
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
HVRNYASGEWLRLINEANLIVDNLITDKLPLEFCSWVARMRTPEALVDAIRIYQQSASTE
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCE
VRTYFALQNDGSFTSDIIMVEAHKAA
EEEEEEEECCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
GCGAGHASFVAAQNVSAVVAYDLSAQMLDVVAQAAEARQLKNITTRQGYAESLPFADNA
CCCCCCHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCH
FDIVISRYSAHHWHDVGAALREVNRILKPGGRMIVMDVMSPGHPVRDIWLQTVEALRDTS
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
HVRNYASGEWLRLINEANLIVDNLITDKLPLEFCSWVARMRTPEALVDAIRIYQQSASTE
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCE
VRTYFALQNDGSFTSDIIMVEAHKAA
EEEEEEEECCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1663890; 9278503 [H]