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The map label for this gene is rbpD [H]

Identifier: 29349248

GI number: 29349248

Start: 4995518

End: 4995763

Strand: Reverse

Name: rbpD [H]

Synonym: BT_3840

Alternate gene names: 29349248

Gene position: 4995763-4995518 (Counterclockwise)

Preceding gene: 29349272

Following gene: 29349245

Centisome position: 79.8

GC content: 41.87

Gene sequence:

>246_bases
ATGAACATTTATGTTGGAAACCTTAACTACCGTGTTAAGGAAGGAGATCTGCAACAAGTGATGGAAGATTACGGAGCAGT
ATCATCAGTTAAAGTAGTTATGGATCGTGAAACCGGTAAATCCAAAGGATTTGCTTTCATCGAAATGGAAGACGATGCAG
CAGCTGCTAAAGCAATCGCAGAATTGAACGGTGCAGAGTACATGGGCCGTACAATGGTAGTTAAAGAAGCTAGACCCAGA
GCTTAA

Upstream 100 bases:

>100_bases
GAAAACGCATTTGTAAACTCTCTGTCGTTTTAATCTTTTTATTAGTAACCATCTATCCAGAGAGTTTTATTCATTTATTT
ATTTTTTTATCATTTTCATT

Downstream 100 bases:

>100_bases
TTGCCGACGCTAATATAGCTAAGAAAAAAAAGAAACTTCTGCCACCTGATGACAGAAGTTTTTTTATGTCCTTCTATTTA
CTTTTCCGTCAGCCTTCCAT

Product: putative RNA-binding protein rbpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MNIYVGNLNYRVKEGDLQQVMEDYGAVSSVKVVMDRETGKSKGFAFIEMEDDAAAAKAIAELNGAEYMGRTMVVKEARPR
A

Sequences:

>Translated_81_residues
MNIYVGNLNYRVKEGDLQQVMEDYGAVSSVKVVMDRETGKSKGFAFIEMEDDAAAAKAIAELNGAEYMGRTMVVKEARPR
A
>Mature_81_residues
MNIYVGNLNYRVKEGDLQQVMEDYGAVSSVKVVMDRETGKSKGFAFIEMEDDAAAAKAIAELNGAEYMGRTMVVKEARPR
A

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4757926, Length=74, Percent_Identity=43.2432432432432, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI35493811, Length=74, Percent_Identity=43.2432432432432, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=40.7894736842105, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI116734694, Length=80, Percent_Identity=36.25, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI116734696, Length=80, Percent_Identity=36.25, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI116734698, Length=80, Percent_Identity=36.25, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=41.25, Blast_Score=75, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=38.961038961039, Blast_Score=72, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=44.7368421052632, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=38.961038961039, Blast_Score=68, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17542530, Length=72, Percent_Identity=43.0555555555556, Blast_Score=61, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322195, Length=80, Percent_Identity=37.5, Blast_Score=61, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=43.421052631579, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=38.75, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=38.75, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=38.75, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=38.75, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=38.75, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 8936; Mature: 8936

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.4 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIYVGNLNYRVKEGDLQQVMEDYGAVSSVKVVMDRETGKSKGFAFIEMEDDAAAAKAIA
CEEEECCCEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEECCCHHHHHHHH
ELNGAEYMGRTMVVKEARPRA
HCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MNIYVGNLNYRVKEGDLQQVMEDYGAVSSVKVVMDRETGKSKGFAFIEMEDDAAAAKAIA
CEEEECCCEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEECCCHHHHHHHH
ELNGAEYMGRTMVVKEARPRA
HCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]