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The map label for this gene is galS [H]

Identifier: 29349205

GI number: 29349205

Start: 4933624

End: 4935705

Strand: Reverse

Name: galS [H]

Synonym: BT_3797

Alternate gene names: 29349205

Gene position: 4935705-4933624 (Counterclockwise)

Preceding gene: 29349206

Following gene: 29349204

Centisome position: 78.84

GC content: 48.03

Gene sequence:

>2082_bases
ATGAAAAGAATAATCCACATCTGTTTATGGCTATTGACGGGCATCTTTGCGGAAGTATCGCTGTCTGCACAGAACCCGTT
TATCTACCATAAAGGGAAGACATACAAAGATGTTGCAGCTTATCGGATGGAAGAAATCATCGACCTGAACACCCATACTC
CATCCACCCCCATTTTATACGAACAACAAGTGCCGGAACACCAAAGCACTCTTTCGTATAAGGTTGCACTTCCTTTGTAT
GTTCGTGGCATATTCTTCAGCCGTGATTCCCGCCCCGGCGACTATCAATGGCCGAATAACACCAATCGGTTGCTCCCTTG
GATGTTCAACCATCTCGAAGACCTCACACGGAGCGATTATGCAAGCATTCCTTCCAATGCCCTGCCGTCCGCATCGGGCG
ACGCACTGCTCCTTGAACTTGCAGACGGAGAATATCTGTTCGCCAAAGCCATTGCGGGTAGCAACAGCCTCAGCTGGTTT
CAGGTTAATCAGGACGGCACACTCACATTGTATGTCTCCACACTAGGAGAAGATGCACTGACCGGCCGACTCCCCCTCCT
GATTTTCCGGAAATCTTCATCCGTCTACCATGTATTCAGTGACGCCTACGATTCGTTAATCGCAGACAAAGCCGTATCTG
CCCTCCGCAAAAGAGCGGACAAACAGTATTTCAATGCTTTCGACTATCTGGGATGGTGTACTTGGGAACATTATCATTAT
GACATTGATGAAACGAAAATACTGAACGATATCGATGCCATCGAAGCATCCGGCATACCGGTACGTTATGTCTTAATTGA
CGACGGACACATAGCGAACAAGAACCGGCAACTGACCAGTCTCGTCCCCGACAAAAAACGTTTTCCGAACGGATGGAGCC
GCATCATGAAGCGCAAACAAGCAGATAAAATCCGATGGATAGGGCTATGGTACAGCCTTTCCGGCTATTGGATGGGAATC
TCTGCCGAGAATGACTTTCCGCCGGAAATCCGGCAAGTTCTACACTCCTACAACGGCAGTTTACTGCCCGGCACCAGTAC
AGAAAAGATAGAAACATGGTACGAATATTATGTCCGTACCATGAAGGAGTATGGATTTGACTTCTTGAAGATAGACAATC
AATCCTTCACCCTCCCGCTCTATATGGGCGGAACGCAGGTTATCCGACAGGCTAAAGACTGCAACCTTGCCCTGGAACAT
CAGACACATCGAATGCAAATGGGACTGATGAACTGCATGGCACAAAATGTGCTGAACATTGACCATACCTTGTACAGCAG
CGTAACCCGTGCCAGCATCGACTATAAGAAATATGACGAGAATATGGCTAAATCACATCTGTTCCAGTCATATACCAATA
CACTCATACTGGGGCAGACCGTCTGGCCCGACCACGATATGTTTCATTCCTGCGATACCGTTTGCGGCAGTCTGATGGCA
CGTTCGAAAGCGATCTCCGGCGGACCTGTTTACCTGTCCGACTCTCCAAGCGAATTTATTGCCGATAATATCCGCCCCCT
GATTGATGAAACCGGAAAGATATTCCGTCCGGCGGCTCCCGCCATCCCGACTCCGGAATCCATACTGACCAATCCCCTGC
AAAGCGGTAAAGCCTACCGTGTATTTGCCCCTACAGGAGACGAAGCGCTCTCAGTCATTTGCTACAATCTGAACACTTCT
CCCGCTTATCGGGAAGTAGAAAGTTTCGTCAAACGGGAAGATTACCTGTTACGGGAAAGCACCGGCAAATCCGCAGATTC
TTCTTGCGACAGCATTCTCGCATTCAACTGGGAAAAACAGAGCGCCGAAGTATTGAACGCATCTGAAAGAAAAATAAAGT
TATCCGGATTTATAGATAGTCTGTTCCATCTTTGCCCCATCCGTAAAGGCTGGGCAGTGATCGGCATACAAGAAAAATAC
CTTTCGCCTGCTACCGTGCAGATACTCAAACGTACTACCGAGAAGCTGATATTGGATGTCCACTGCACCGGTACATTAAG
AATATGGGCAGACTCCCACGGGAAACAGGAATTACGGAGCATACCGATCAAAAAGGCCGGCAGAATTGAAATAATGAAAT
AA

Upstream 100 bases:

>100_bases
CCGGTAGAAGCCACAGCATTAAGACTGACCGTATCCGAATCTATCGCACTGCCGGATATTATAAACTTCAGCGCCTATTC
CGTAAAATAACACAAGAGGT

Downstream 100 bases:

>100_bases
CACTAAATAATTAATCCATGAACAAAAAAATACTTTTCCCCCTCGCACTCGTGCCACTGGCTGCCACCGGCCTGCAAACA
CAGAAGTCTGCCCAGACACA

Product: hypothetical protein

Products: NA

Alternate protein names: Alpha-Gal [H]

Number of amino acids: Translated: 693; Mature: 693

Protein sequence:

>693_residues
MKRIIHICLWLLTGIFAEVSLSAQNPFIYHKGKTYKDVAAYRMEEIIDLNTHTPSTPILYEQQVPEHQSTLSYKVALPLY
VRGIFFSRDSRPGDYQWPNNTNRLLPWMFNHLEDLTRSDYASIPSNALPSASGDALLLELADGEYLFAKAIAGSNSLSWF
QVNQDGTLTLYVSTLGEDALTGRLPLLIFRKSSSVYHVFSDAYDSLIADKAVSALRKRADKQYFNAFDYLGWCTWEHYHY
DIDETKILNDIDAIEASGIPVRYVLIDDGHIANKNRQLTSLVPDKKRFPNGWSRIMKRKQADKIRWIGLWYSLSGYWMGI
SAENDFPPEIRQVLHSYNGSLLPGTSTEKIETWYEYYVRTMKEYGFDFLKIDNQSFTLPLYMGGTQVIRQAKDCNLALEH
QTHRMQMGLMNCMAQNVLNIDHTLYSSVTRASIDYKKYDENMAKSHLFQSYTNTLILGQTVWPDHDMFHSCDTVCGSLMA
RSKAISGGPVYLSDSPSEFIADNIRPLIDETGKIFRPAAPAIPTPESILTNPLQSGKAYRVFAPTGDEALSVICYNLNTS
PAYREVESFVKREDYLLRESTGKSADSSCDSILAFNWEKQSAEVLNASERKIKLSGFIDSLFHLCPIRKGWAVIGIQEKY
LSPATVQILKRTTEKLILDVHCTGTLRIWADSHGKQELRSIPIKKAGRIEIMK

Sequences:

>Translated_693_residues
MKRIIHICLWLLTGIFAEVSLSAQNPFIYHKGKTYKDVAAYRMEEIIDLNTHTPSTPILYEQQVPEHQSTLSYKVALPLY
VRGIFFSRDSRPGDYQWPNNTNRLLPWMFNHLEDLTRSDYASIPSNALPSASGDALLLELADGEYLFAKAIAGSNSLSWF
QVNQDGTLTLYVSTLGEDALTGRLPLLIFRKSSSVYHVFSDAYDSLIADKAVSALRKRADKQYFNAFDYLGWCTWEHYHY
DIDETKILNDIDAIEASGIPVRYVLIDDGHIANKNRQLTSLVPDKKRFPNGWSRIMKRKQADKIRWIGLWYSLSGYWMGI
SAENDFPPEIRQVLHSYNGSLLPGTSTEKIETWYEYYVRTMKEYGFDFLKIDNQSFTLPLYMGGTQVIRQAKDCNLALEH
QTHRMQMGLMNCMAQNVLNIDHTLYSSVTRASIDYKKYDENMAKSHLFQSYTNTLILGQTVWPDHDMFHSCDTVCGSLMA
RSKAISGGPVYLSDSPSEFIADNIRPLIDETGKIFRPAAPAIPTPESILTNPLQSGKAYRVFAPTGDEALSVICYNLNTS
PAYREVESFVKREDYLLRESTGKSADSSCDSILAFNWEKQSAEVLNASERKIKLSGFIDSLFHLCPIRKGWAVIGIQEKY
LSPATVQILKRTTEKLILDVHCTGTLRIWADSHGKQELRSIPIKKAGRIEIMK
>Mature_693_residues
MKRIIHICLWLLTGIFAEVSLSAQNPFIYHKGKTYKDVAAYRMEEIIDLNTHTPSTPILYEQQVPEHQSTLSYKVALPLY
VRGIFFSRDSRPGDYQWPNNTNRLLPWMFNHLEDLTRSDYASIPSNALPSASGDALLLELADGEYLFAKAIAGSNSLSWF
QVNQDGTLTLYVSTLGEDALTGRLPLLIFRKSSSVYHVFSDAYDSLIADKAVSALRKRADKQYFNAFDYLGWCTWEHYHY
DIDETKILNDIDAIEASGIPVRYVLIDDGHIANKNRQLTSLVPDKKRFPNGWSRIMKRKQADKIRWIGLWYSLSGYWMGI
SAENDFPPEIRQVLHSYNGSLLPGTSTEKIETWYEYYVRTMKEYGFDFLKIDNQSFTLPLYMGGTQVIRQAKDCNLALEH
QTHRMQMGLMNCMAQNVLNIDHTLYSSVTRASIDYKKYDENMAKSHLFQSYTNTLILGQTVWPDHDMFHSCDTVCGSLMA
RSKAISGGPVYLSDSPSEFIADNIRPLIDETGKIFRPAAPAIPTPESILTNPLQSGKAYRVFAPTGDEALSVICYNLNTS
PAYREVESFVKREDYLLRESTGKSADSSCDSILAFNWEKQSAEVLNASERKIKLSGFIDSLFHLCPIRKGWAVIGIQEKY
LSPATVQILKRTTEKLILDVHCTGTLRIWADSHGKQELRSIPIKKAGRIEIMK

Specific function: Involved in the degradation of various alpha-linked galactosides such as raffinose, stachyose and melibiose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 36 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR017853
- InterPro:   IPR008811 [H]

Pfam domain/function: PF05691 Raffinose_syn [H]

EC number: =3.2.1.22 [H]

Molecular weight: Translated: 78819; Mature: 78819

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIIHICLWLLTGIFAEVSLSAQNPFIYHKGKTYKDVAAYRMEEIIDLNTHTPSTPILY
CHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEE
EQQVPEHQSTLSYKVALPLYVRGIFFSRDSRPGDYQWPNNTNRLLPWMFNHLEDLTRSDY
CCCCCCCHHCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ASIPSNALPSASGDALLLELADGEYLFAKAIAGSNSLSWFQVNQDGTLTLYVSTLGEDAL
HCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCEEEEEEEECCCCHH
TGRLPLLIFRKSSSVYHVFSDAYDSLIADKAVSALRKRADKQYFNAFDYLGWCTWEHYHY
CCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
DIDETKILNDIDAIEASGIPVRYVLIDDGHIANKNRQLTSLVPDKKRFPNGWSRIMKRKQ
CCCHHHHHHHHHHHCCCCCCEEEEEEECCEECCCCCCHHHCCCCHHCCCCHHHHHHHHHH
ADKIRWIGLWYSLSGYWMGISAENDFPPEIRQVLHSYNGSLLPGTSTEKIETWYEYYVRT
CCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
MKEYGFDFLKIDNQSFTLPLYMGGTQVIRQAKDCNLALEHQTHRMQMGLMNCMAQNVLNI
HHHHCCEEEEECCCCEEEEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHH
DHTLYSSVTRASIDYKKYDENMAKSHLFQSYTNTLILGQTVWPDHDMFHSCDTVCGSLMA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHH
RSKAISGGPVYLSDSPSEFIADNIRPLIDETGKIFRPAAPAIPTPESILTNPLQSGKAYR
HHCCCCCCEEEECCCCHHHHHHCCHHHHHCCCCEECCCCCCCCCCHHHHCCHHHCCCEEE
VFAPTGDEALSVICYNLNTSPAYREVESFVKREDYLLRESTGKSADSSCDSILAFNWEKQ
EECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHH
SAEVLNASERKIKLSGFIDSLFHLCPIRKGWAVIGIQEKYLSPATVQILKRTTEKLILDV
HHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEE
HCTGTLRIWADSHGKQELRSIPIKKAGRIEIMK
EECEEEEEEECCCCHHHHHCCCCCCCCCEEEEC
>Mature Secondary Structure
MKRIIHICLWLLTGIFAEVSLSAQNPFIYHKGKTYKDVAAYRMEEIIDLNTHTPSTPILY
CHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEE
EQQVPEHQSTLSYKVALPLYVRGIFFSRDSRPGDYQWPNNTNRLLPWMFNHLEDLTRSDY
CCCCCCCHHCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ASIPSNALPSASGDALLLELADGEYLFAKAIAGSNSLSWFQVNQDGTLTLYVSTLGEDAL
HCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCEEEEEEEECCCCHH
TGRLPLLIFRKSSSVYHVFSDAYDSLIADKAVSALRKRADKQYFNAFDYLGWCTWEHYHY
CCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
DIDETKILNDIDAIEASGIPVRYVLIDDGHIANKNRQLTSLVPDKKRFPNGWSRIMKRKQ
CCCHHHHHHHHHHHCCCCCCEEEEEEECCEECCCCCCHHHCCCCHHCCCCHHHHHHHHHH
ADKIRWIGLWYSLSGYWMGISAENDFPPEIRQVLHSYNGSLLPGTSTEKIETWYEYYVRT
CCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
MKEYGFDFLKIDNQSFTLPLYMGGTQVIRQAKDCNLALEHQTHRMQMGLMNCMAQNVLNI
HHHHCCEEEEECCCCEEEEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHH
DHTLYSSVTRASIDYKKYDENMAKSHLFQSYTNTLILGQTVWPDHDMFHSCDTVCGSLMA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHH
RSKAISGGPVYLSDSPSEFIADNIRPLIDETGKIFRPAAPAIPTPESILTNPLQSGKAYR
HHCCCCCCEEEECCCCHHHHHHCCHHHHHCCCCEECCCCCCCCCCHHHHCCHHHCCCEEE
VFAPTGDEALSVICYNLNTSPAYREVESFVKREDYLLRESTGKSADSSCDSILAFNWEKQ
EECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHH
SAEVLNASERKIKLSGFIDSLFHLCPIRKGWAVIGIQEKYLSPATVQILKRTTEKLILDV
HHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEE
HCTGTLRIWADSHGKQELRSIPIKKAGRIEIMK
EECEEEEEEECCCCHHHHHCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]