| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349002
Identifier: 29349002
GI number: 29349002
Start: 4651691
End: 4653301
Strand: Reverse
Name: 29349002
Synonym: BT_3594
Alternate gene names: NA
Gene position: 4653301-4651691 (Counterclockwise)
Preceding gene: 29349003
Following gene: 29349001
Centisome position: 74.33
GC content: 41.65
Gene sequence:
>1611_bases ATGAAACAGATTATATTTATAGCAATATTATTAACATGTGCCTTCGGAGCCTGCTCAAGTGACAATGACGGCGACGAACA GTCTGCAAGCGTACAAGCACCTTCAGACATAACCATAGAAAGAATGGGAAAAACCAAAGTATTACTACGTTGGAAAGACA ATAGTAATAATGAAACCGGATTCAGCATCTTATTAAGAAAAGCAGATACCAGTGAAAATATAGAAATAGCCAAGGTATCC GCAAATGTCACAGAATATACAATCGAAAATGGTCTGGAAGAAGGAAACATATACTATTTCGGAGTAAGAGCATTCTCGGC TACGAATACTTCACGTGCCATTTACGAGCTCTATCGGTTGGTAGCCCTCGGTGACGAGCCAAGCATCGCAATCATAGGAA GTATCAAAGCAAACTCAACTTGTATCAGTTCCTCTTATCAAGTGACAAACATAGCTGGACAAACCAACGTAAAATATGGT TTATGCTGGAGTACCGAAAACACACCCACTATCAATGATCAAAAGCAAAACGGACCGGAAGTTGCTGAAGACGGAAAAGT ATTTCAAGTGATTCCGAATACCTTACTCGACTATGGCAAATCCTATAAAGTACGTGCCTTCCTGACAACCTCTACCGGTA CTTATTACAGTGCAGAGTCGACTGTTTCCTTGGAAACAGAGCCACAAGCGATCCAATTGACATGGAATAAACTGACCAAG TCTACATTACCGGCAGAAATCGAACTGTACGAAACCACCAGTAACTTAAATGGTAGTAATTTCCATGCATGGTACGCCAT TGGTGATCTCTCTACCGGTAAGGTAGAAGTACGTGTCCACATACCATCTTCTCCCGCAACCATCGACACGCAATCTGCGT CATTCAATGGAGACTGTTATTTATTGGTCAATGGAGGATACTTCTATAATGGAAACCATACAGGAATAGCTGTTATCAAT TCCATTAAATCGGGCTCTGTTTCAGCCGTTCGGGGGTCACTAAAAACTGGCGATACAGAATACAACAGTATGTATAATGT GACAAGAGGAACATTCGGCGTAGATGCTTCAGGCAAGCCGAATGTTGTTTGGACAGGAACGGATGCCTCCAGCAATGTTT TCTATTTCGACCGTCCTTTGCCATCTGTCAAAGGAGAAAATAAATATGGAATTGTCACTAATGAAAATCCGACTACCGCA ATTAGCTGGAGTCCTAAATATGCTTTAAGTGCAGGTCCTGTATTACTGAAAGACAAAAAAATCCCATTCGATTTTACAGA GACATCAAAGGGCACAGATTACTATCTCAGTAACTATGAAATCATTCCGTATGACATTTTCGGAGCGAATGTAACCCCGG ACCGTACAGCAATCGGTTATCGTGAAGATGGAAAAGTGGTCATATTCATATGTGACGGACGTATTACCGCCAGTGGTGGA GCTACTTTAACAGAACTGGCACAAATAATGAAAGGATTAGGCTGTGTAGGAGCTATTAATCTTGATGGCGGAGGTTCTAC CGGAATGGTTGTAGGAGACGAACACTTGAATGACATGACCGGAGGAAACCGGGCAGTCGTTTCTACAATTGGATTCTTCA AGAAAAATTAG
Upstream 100 bases:
>100_bases ACACTGCCTAATAAAAAACAAATAACCGTCAAAGCACTTGATGCGATCAGAATCAGCAAATAAACAGTCTTTGTAATCAA ACAATAAATAGTACAGTAAA
Downstream 100 bases:
>100_bases CCCAATCCGGATATTCATAAAAGCTATAGCAATATACATAGTAAGTTTCTTTTTATGTATATTGCATTGCTTTTATAAAC AACCATTTATTATGAAAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 536; Mature: 536
Protein sequence:
>536_residues MKQIIFIAILLTCAFGACSSDNDGDEQSASVQAPSDITIERMGKTKVLLRWKDNSNNETGFSILLRKADTSENIEIAKVS ANVTEYTIENGLEEGNIYYFGVRAFSATNTSRAIYELYRLVALGDEPSIAIIGSIKANSTCISSSYQVTNIAGQTNVKYG LCWSTENTPTINDQKQNGPEVAEDGKVFQVIPNTLLDYGKSYKVRAFLTTSTGTYYSAESTVSLETEPQAIQLTWNKLTK STLPAEIELYETTSNLNGSNFHAWYAIGDLSTGKVEVRVHIPSSPATIDTQSASFNGDCYLLVNGGYFYNGNHTGIAVIN SIKSGSVSAVRGSLKTGDTEYNSMYNVTRGTFGVDASGKPNVVWTGTDASSNVFYFDRPLPSVKGENKYGIVTNENPTTA ISWSPKYALSAGPVLLKDKKIPFDFTETSKGTDYYLSNYEIIPYDIFGANVTPDRTAIGYREDGKVVIFICDGRITASGG ATLTELAQIMKGLGCVGAINLDGGGSTGMVVGDEHLNDMTGGNRAVVSTIGFFKKN
Sequences:
>Translated_536_residues MKQIIFIAILLTCAFGACSSDNDGDEQSASVQAPSDITIERMGKTKVLLRWKDNSNNETGFSILLRKADTSENIEIAKVS ANVTEYTIENGLEEGNIYYFGVRAFSATNTSRAIYELYRLVALGDEPSIAIIGSIKANSTCISSSYQVTNIAGQTNVKYG LCWSTENTPTINDQKQNGPEVAEDGKVFQVIPNTLLDYGKSYKVRAFLTTSTGTYYSAESTVSLETEPQAIQLTWNKLTK STLPAEIELYETTSNLNGSNFHAWYAIGDLSTGKVEVRVHIPSSPATIDTQSASFNGDCYLLVNGGYFYNGNHTGIAVIN SIKSGSVSAVRGSLKTGDTEYNSMYNVTRGTFGVDASGKPNVVWTGTDASSNVFYFDRPLPSVKGENKYGIVTNENPTTA ISWSPKYALSAGPVLLKDKKIPFDFTETSKGTDYYLSNYEIIPYDIFGANVTPDRTAIGYREDGKVVIFICDGRITASGG ATLTELAQIMKGLGCVGAINLDGGGSTGMVVGDEHLNDMTGGNRAVVSTIGFFKKN >Mature_536_residues MKQIIFIAILLTCAFGACSSDNDGDEQSASVQAPSDITIERMGKTKVLLRWKDNSNNETGFSILLRKADTSENIEIAKVS ANVTEYTIENGLEEGNIYYFGVRAFSATNTSRAIYELYRLVALGDEPSIAIIGSIKANSTCISSSYQVTNIAGQTNVKYG LCWSTENTPTINDQKQNGPEVAEDGKVFQVIPNTLLDYGKSYKVRAFLTTSTGTYYSAESTVSLETEPQAIQLTWNKLTK STLPAEIELYETTSNLNGSNFHAWYAIGDLSTGKVEVRVHIPSSPATIDTQSASFNGDCYLLVNGGYFYNGNHTGIAVIN SIKSGSVSAVRGSLKTGDTEYNSMYNVTRGTFGVDASGKPNVVWTGTDASSNVFYFDRPLPSVKGENKYGIVTNENPTTA ISWSPKYALSAGPVLLKDKKIPFDFTETSKGTDYYLSNYEIIPYDIFGANVTPDRTAIGYREDGKVVIFICDGRITASGG ATLTELAQIMKGLGCVGAINLDGGGSTGMVVGDEHLNDMTGGNRAVVSTIGFFKKN
Specific function: Unknown
COG id: COG4632
COG function: function code G; Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57855; Mature: 57855
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQIIFIAILLTCAFGACSSDNDGDEQSASVQAPSDITIERMGKTKVLLRWKDNSNNETG CCHHEEEHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEECCCEEEEEEEECCCCCCCC FSILLRKADTSENIEIAKVSANVTEYTIENGLEEGNIYYFGVRAFSATNTSRAIYELYRL EEEEEEECCCCCCEEEEEEECCCEEEEHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHH VALGDEPSIAIIGSIKANSTCISSSYQVTNIAGQTNVKYGLCWSTENTPTINDQKQNGPE EEECCCCCEEEEEECCCCCEEECCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC VAEDGKVFQVIPNTLLDYGKSYKVRAFLTTSTGTYYSAESTVSLETEPQAIQLTWNKLTK CCCCCCEEEECCHHHHHCCCCEEEEEEEEECCCEEEECCCEEEECCCCCEEEEEEHHHHC STLPAEIELYETTSNLNGSNFHAWYAIGDLSTGKVEVRVHIPSSPATIDTQSASFNGDCY CCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEECCCCCCCCEE LLVNGGYFYNGNHTGIAVINSIKSGSVSAVRGSLKTGDTEYNSMYNVTRGTFGVDASGKP EEECCCEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEECCCEEECCCCCCC NVVWTGTDASSNVFYFDRPLPSVKGENKYGIVTNENPTTAISWSPKYALSAGPVLLKDKK CEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCEEECCCCEEEECCC IPFDFTETSKGTDYYLSNYEIIPYDIFGANVTPDRTAIGYREDGKVVIFICDGRITASGG CCCCCCCCCCCCEEEECCEEEEEEEEECCCCCCCCCEECCCCCCCEEEEEECCEEEECCC ATLTELAQIMKGLGCVGAINLDGGGSTGMVVGDEHLNDMTGGNRAVVSTIGFFKKN CCHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHCCCCCCCCEEEEEEECCEECC >Mature Secondary Structure MKQIIFIAILLTCAFGACSSDNDGDEQSASVQAPSDITIERMGKTKVLLRWKDNSNNETG CCHHEEEHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEECCCEEEEEEEECCCCCCCC FSILLRKADTSENIEIAKVSANVTEYTIENGLEEGNIYYFGVRAFSATNTSRAIYELYRL EEEEEEECCCCCCEEEEEEECCCEEEEHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHH VALGDEPSIAIIGSIKANSTCISSSYQVTNIAGQTNVKYGLCWSTENTPTINDQKQNGPE EEECCCCCEEEEEECCCCCEEECCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC VAEDGKVFQVIPNTLLDYGKSYKVRAFLTTSTGTYYSAESTVSLETEPQAIQLTWNKLTK CCCCCCEEEECCHHHHHCCCCEEEEEEEEECCCEEEECCCEEEECCCCCEEEEEEHHHHC STLPAEIELYETTSNLNGSNFHAWYAIGDLSTGKVEVRVHIPSSPATIDTQSASFNGDCY CCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEECCCCCCCCEE LLVNGGYFYNGNHTGIAVINSIKSGSVSAVRGSLKTGDTEYNSMYNVTRGTFGVDASGKP EEECCCEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEECCCEEECCCCCCC NVVWTGTDASSNVFYFDRPLPSVKGENKYGIVTNENPTTAISWSPKYALSAGPVLLKDKK CEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCEEECCCCEEEECCC IPFDFTETSKGTDYYLSNYEIIPYDIFGANVTPDRTAIGYREDGKVVIFICDGRITASGG CCCCCCCCCCCCEEEECCEEEEEEEEECCCCCCCCCEECCCCCCCEEEEEECCEEEECCC ATLTELAQIMKGLGCVGAINLDGGGSTGMVVGDEHLNDMTGGNRAVVSTIGFFKKN CCHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHCCCCCCCCEEEEEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA