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The map label for this gene is rpoE [H]

Identifier: 29348866

GI number: 29348866

Start: 4452980

End: 4453483

Strand: Reverse

Name: rpoE [H]

Synonym: BT_3457

Alternate gene names: 29348866

Gene position: 4453483-4452980 (Counterclockwise)

Preceding gene: 29348869

Following gene: 29348865

Centisome position: 71.14

GC content: 44.64

Gene sequence:

>504_bases
ATGAAAAGTTTAAGCTTCAGAAAAGATTTAGTAGGAGTACAGGATGAGTTACTCCGCTTCGCATACAAACTGACAACTGA
CCGCGAAGAAGCAAACGATTTGTTGCAGGAGACATCACTCAAAGCATTAGACAATGAGGATAAATATATGCCCGACACAA
ATTTCAAAGGATGGATGTATACCATCATGCGCAATATCTTTATCAACAACTACCGTAAAGTAGTTCGCGACCAGACATTC
ATCGATCAGACCGATAATCTTTATCATCTGAACCTGCCGCAAGACACCGGCTTTGAAAGTACGGAAAGAACGTACGACCT
GAAAGAAATGCATCGGGTAGTCAACGCGCTCCCGAAAGAATATAGAGTTCCGTTCGCTATGCACGTTTCCGGCTTCAAGT
ACCGCGAAATCGCTGAAAAGCTGAACCTCCCGCTGGGCACCGTGAAGAGCCGTATCTTCTTCACCCGCCAGAAATTGCAG
GAAGAACTGAAAGACTTTCGCTAA

Upstream 100 bases:

>100_bases
TAAATTTTGTCGGTTCATACCCTATCTCATTATCAGAAATGCCGTAAACTTGCACCATCGAAAAATACAAACGAATATTC
ACTTTTTAAAAGCAACGTAT

Downstream 100 bases:

>100_bases
ACCTTTAACTATATTATTTATCAATTCCAAGTTAGATATTTTTAGTGCAGATTTTTAATTGTGTTAGTTTAAGGCAGAAG
AGTTACCATACCTTCTGCCT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKSLSFRKDLVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMYTIMRNIFINNYRKVVRDQTF
IDQTDNLYHLNLPQDTGFESTERTYDLKEMHRVVNALPKEYRVPFAMHVSGFKYREIAEKLNLPLGTVKSRIFFTRQKLQ
EELKDFR

Sequences:

>Translated_167_residues
MKSLSFRKDLVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMYTIMRNIFINNYRKVVRDQTF
IDQTDNLYHLNLPQDTGFESTERTYDLKEMHRVVNALPKEYRVPFAMHVSGFKYREIAEKLNLPLGTVKSRIFFTRQKLQ
EELKDFR
>Mature_167_residues
MKSLSFRKDLVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMYTIMRNIFINNYRKVVRDQTF
IDQTDNLYHLNLPQDTGFESTERTYDLKEMHRVVNALPKEYRVPFAMHVSGFKYREIAEKLNLPLGTVKSRIFFTRQKLQ
EELKDFR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20019; Mature: 20019

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLSFRKDLVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMY
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
TIMRNIFINNYRKVVRDQTFIDQTDNLYHLNLPQDTGFESTERTYDLKEMHRVVNALPKE
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHH
YRVPFAMHVSGFKYREIAEKLNLPLGTVKSRIFFTRQKLQEELKDFR
HCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSLSFRKDLVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMY
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
TIMRNIFINNYRKVVRDQTFIDQTDNLYHLNLPQDTGFESTERTYDLKEMHRVVNALPKE
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHH
YRVPFAMHVSGFKYREIAEKLNLPLGTVKSRIFFTRQKLQEELKDFR
HCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]