| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is cbg-1 [H]
Identifier: 29348709
GI number: 29348709
Start: 4231298
End: 4233775
Strand: Reverse
Name: cbg-1 [H]
Synonym: BT_3300
Alternate gene names: 29348709
Gene position: 4233775-4231298 (Counterclockwise)
Preceding gene: 29348710
Following gene: 29348708
Centisome position: 67.63
GC content: 40.92
Gene sequence:
>2478_bases ATGAAACAAAAAAGACTTACGTTTTTACTCCTGTTAATCTCCAACCTTTTTTGTGCATCTGCTCAAAAATGGTATAAACC AGAGATTGATCTAAAAGTTGAAGAGCTACTGAGCCAAATGACAGTAGAAGAAAAACTTGGATATATCGGTGGCATTGACT GGATGTACACTAAAAGCATTGATCGCCTGGGTATTCATCGCATGAGAATGTCCGATGGACCGCAAGGGATAGGCACAAAA GGCAAGTCTACCGCATACCCGGCTACAGTGACACTAGCAGCTACTTGGAACGAGAATCTTGCCTATCAATACGGAAAAGC TTTGGGACGTGATTGCAGAGCAAGAAACATCAATGTCATATTAGGTCCAGCGGTCAATATCTACCGTGCCCCAATGTGTG GACGTAACTTTGAATATATGGGTGAAGATCCGTATTTAACATCCCGTATCTGTGTAGGATACATCAAAGGTGTACAAGAT CAAGGTGTCATGGCTACAGTCAAACACTTCGTTGCCAACAACTCCGACTATGACCGTAATAATATCAGTAATGATATTGA TGAAAGAACCTTGAATGAGATTTACTTCCCTGCTTATAAAGCTGCCATTCAGGAAGCAGAAGTAGGAGCCATCATGACAA GCTATAACTTGATGAATGGCATCTACACCACTGAAAACCCGTGGCTATTGAAAGAAGTACTCAGAAATCAATGGGGCTTC AAAGGATTAGTGATGTCTGACTGGGGATCGACTCATTACTGTGTTCCAGCTGCAAGAAGCGGATTAGATCTGGAAATGGC AGGAGGAGAAAAGATGAATCCTAAAGATATGGCTTACTATCTTAAAACAGGAGATGTGACTATGGATATGGTTGACGAAA AAGTACGCCACATCTTACGCATACTCATTGCTTTCGGATTCAAGGATGGTACGGAAGCTGACAAAAGTATCGCTCTGGAT GACCCTCAATCTGTAGAAACAGCATTAAATGTTGCCAGAGAGGGACTTGTTCTTTTGAAGAATGAAAACAACATTCTTCC TATCAATCCCCAAAAATACAAACATATTATCGTTACCGGCAAAAATGCACATGGATATGTACATGGTGGTGGTAGTGGCG CTGTAGTTCCTTTCCATTATACCAATTTATTCGACGGAATCCAAAAAGAAGGTAAACTGAATAATGTAAAAGTAGAATAT ATTGATGAACTCGACTTTATGCCGTCCATCATGTATACAGACGACAATCTCAACGAAAAGGGATTTCATGCCGAATACTT CAAGAATATTCACTTCGAAGGAGCCCCTGTGGTAAAACAGACTGAGAAAAAAATCAATTATTCTTGGGCTGCAGGCACAG AATTGGAAGGTATGCCCAAAGATTATTTCTCTGTGAAATGGTACAGTACAATGTGCGTAGACGAAACCGCTGACTATGAG TTCACATTAGGAGGCGACGATGGTTATAAATTGTTTATCAACGACCAACCGATTATTGATGACTGGACGCCCGGAGGTTT CAGAACGACCAATGTTACCAAGACACTAAAAGCCGGTGAAAAATATCATGTACGTGTAGAATACTATCAGCAGGGTGGTG GAGCAGGTATCTGCTTTTTATGGAAACGTAAGAACGAGACTCAGAATAAGTTTGCCGATTACCTGAACAAAGCAGATTTA GTGATTGCCTGCTTCGGTCATAGTTCCGATACAGAAGGAGAAGCAAGCGACCGCACATTCGAACTGCCCGAAGTAGATAA AAAAATGCTGGCCAGCTTATCCGGATGTAAAAAGCCTGTTATCGGTATTGTAAATGCCGGAGGTAATATTGAAATGCAAA AATGGGAACCGTCTTTGAAGGGGCTTATTTGGGGATTTTATGGAGGTCAGGAAGCGGGAACAGCTATCGGCGAAGCTTTA TTCGGTAAAGTTAACCCATCAGGAAAATTACCTATGACTTTTGAAAAGAAATGGGAAGACAGCCCCGCTTACAACAGCTA TCATGACCCGGATAAAGACAAACATGTAGCATATACGGAAGGAATATTCATCGGCTATCGCGGCTATGACAAATTGAAAC GTGAAGTACAATATCCTTTTGGCTACGGATTGTCTTATACCACCTTTAAGCTATCTAATATAGTAGTCTCAAAGCCAAAT GCTGATGGAACAGTAGAAGTAACCTGCCGTCTTGCCAACACAGGAAAAAGAGATGGTGCACAAGTCATACAAGCCTATGT GGGCAAAGCAGAAAACAGCCCAGTAGAACGTCCCCAAAAAGAACTGAGAAAATTTGAAAAGATATTCCTGAAAGCCGGAG AATCCACAACTGTCAAGATGACATTACCTAAAGAATCATTTATGTATTTTGATGTCAACAGAACTCAGTTCGTCACTGAT CCGGGTATTTACAATATAATGCTTGGCTTCTCCTCTAGAGATATTAAAGCACAAAAAAATATTCAATATACACTATAG
Upstream 100 bases:
>100_bases AAACAATAAATAATTAAGGCTATATAATATAAAGGTCTTCCGTCACAACACAGCACAAAATAATAGCTACACAAAAACCA ATACTCAAAAGAAAATTAAT
Downstream 100 bases:
>100_bases ATTGCATAATCAATAAGTAACATGAAATATATTTGTATCAAAACTGTAGCAATTTACTTGCTCGCAACCTTACCTTTATT GGCGAACGCCTCAACACACA
Product: beta-glucosidase
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 825; Mature: 825
Protein sequence:
>825_residues MKQKRLTFLLLLISNLFCASAQKWYKPEIDLKVEELLSQMTVEEKLGYIGGIDWMYTKSIDRLGIHRMRMSDGPQGIGTK GKSTAYPATVTLAATWNENLAYQYGKALGRDCRARNINVILGPAVNIYRAPMCGRNFEYMGEDPYLTSRICVGYIKGVQD QGVMATVKHFVANNSDYDRNNISNDIDERTLNEIYFPAYKAAIQEAEVGAIMTSYNLMNGIYTTENPWLLKEVLRNQWGF KGLVMSDWGSTHYCVPAARSGLDLEMAGGEKMNPKDMAYYLKTGDVTMDMVDEKVRHILRILIAFGFKDGTEADKSIALD DPQSVETALNVAREGLVLLKNENNILPINPQKYKHIIVTGKNAHGYVHGGGSGAVVPFHYTNLFDGIQKEGKLNNVKVEY IDELDFMPSIMYTDDNLNEKGFHAEYFKNIHFEGAPVVKQTEKKINYSWAAGTELEGMPKDYFSVKWYSTMCVDETADYE FTLGGDDGYKLFINDQPIIDDWTPGGFRTTNVTKTLKAGEKYHVRVEYYQQGGGAGICFLWKRKNETQNKFADYLNKADL VIACFGHSSDTEGEASDRTFELPEVDKKMLASLSGCKKPVIGIVNAGGNIEMQKWEPSLKGLIWGFYGGQEAGTAIGEAL FGKVNPSGKLPMTFEKKWEDSPAYNSYHDPDKDKHVAYTEGIFIGYRGYDKLKREVQYPFGYGLSYTTFKLSNIVVSKPN ADGTVEVTCRLANTGKRDGAQVIQAYVGKAENSPVERPQKELRKFEKIFLKAGESTTVKMTLPKESFMYFDVNRTQFVTD PGIYNIMLGFSSRDIKAQKNIQYTL
Sequences:
>Translated_825_residues MKQKRLTFLLLLISNLFCASAQKWYKPEIDLKVEELLSQMTVEEKLGYIGGIDWMYTKSIDRLGIHRMRMSDGPQGIGTK GKSTAYPATVTLAATWNENLAYQYGKALGRDCRARNINVILGPAVNIYRAPMCGRNFEYMGEDPYLTSRICVGYIKGVQD QGVMATVKHFVANNSDYDRNNISNDIDERTLNEIYFPAYKAAIQEAEVGAIMTSYNLMNGIYTTENPWLLKEVLRNQWGF KGLVMSDWGSTHYCVPAARSGLDLEMAGGEKMNPKDMAYYLKTGDVTMDMVDEKVRHILRILIAFGFKDGTEADKSIALD DPQSVETALNVAREGLVLLKNENNILPINPQKYKHIIVTGKNAHGYVHGGGSGAVVPFHYTNLFDGIQKEGKLNNVKVEY IDELDFMPSIMYTDDNLNEKGFHAEYFKNIHFEGAPVVKQTEKKINYSWAAGTELEGMPKDYFSVKWYSTMCVDETADYE FTLGGDDGYKLFINDQPIIDDWTPGGFRTTNVTKTLKAGEKYHVRVEYYQQGGGAGICFLWKRKNETQNKFADYLNKADL VIACFGHSSDTEGEASDRTFELPEVDKKMLASLSGCKKPVIGIVNAGGNIEMQKWEPSLKGLIWGFYGGQEAGTAIGEAL FGKVNPSGKLPMTFEKKWEDSPAYNSYHDPDKDKHVAYTEGIFIGYRGYDKLKREVQYPFGYGLSYTTFKLSNIVVSKPN ADGTVEVTCRLANTGKRDGAQVIQAYVGKAENSPVERPQKELRKFEKIFLKAGESTTVKMTLPKESFMYFDVNRTQFVTD PGIYNIMLGFSSRDIKAQKNIQYTL >Mature_825_residues MKQKRLTFLLLLISNLFCASAQKWYKPEIDLKVEELLSQMTVEEKLGYIGGIDWMYTKSIDRLGIHRMRMSDGPQGIGTK GKSTAYPATVTLAATWNENLAYQYGKALGRDCRARNINVILGPAVNIYRAPMCGRNFEYMGEDPYLTSRICVGYIKGVQD QGVMATVKHFVANNSDYDRNNISNDIDERTLNEIYFPAYKAAIQEAEVGAIMTSYNLMNGIYTTENPWLLKEVLRNQWGF KGLVMSDWGSTHYCVPAARSGLDLEMAGGEKMNPKDMAYYLKTGDVTMDMVDEKVRHILRILIAFGFKDGTEADKSIALD DPQSVETALNVAREGLVLLKNENNILPINPQKYKHIIVTGKNAHGYVHGGGSGAVVPFHYTNLFDGIQKEGKLNNVKVEY IDELDFMPSIMYTDDNLNEKGFHAEYFKNIHFEGAPVVKQTEKKINYSWAAGTELEGMPKDYFSVKWYSTMCVDETADYE FTLGGDDGYKLFINDQPIIDDWTPGGFRTTNVTKTLKAGEKYHVRVEYYQQGGGAGICFLWKRKNETQNKFADYLNKADL VIACFGHSSDTEGEASDRTFELPEVDKKMLASLSGCKKPVIGIVNAGGNIEMQKWEPSLKGLIWGFYGGQEAGTAIGEAL FGKVNPSGKLPMTFEKKWEDSPAYNSYHDPDKDKHVAYTEGIFIGYRGYDKLKREVQYPFGYGLSYTTFKLSNIVVSKPN ADGTVEVTCRLANTGKRDGAQVIQAYVGKAENSPVERPQKELRKFEKIFLKAGESTTVKMTLPKESFMYFDVNRTQFVTD PGIYNIMLGFSSRDIKAQKNIQYTL
Specific function: Involved in modifying a vir-inducing plant signal molecule. Hydrolyzes coniferin but not cellobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=267, Percent_Identity=34.4569288389513, Blast_Score=157, Evalue=2e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 - InterPro: IPR011658 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 92854; Mature: 92854
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS00775 GLYCOSYL_HYDROL_F3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQKRLTFLLLLISNLFCASAQKWYKPEIDLKVEELLSQMTVEEKLGYIGGIDWMYTKSI CCCHHHHHHHHHHHHHHHHCCHHHCCCCCCEEHHHHHHHHHHHHHCCHHCCCCCHHHCCH DRLGIHRMRMSDGPQGIGTKGKSTAYPATVTLAATWNENLAYQYGKALGRDCRARNINVI HHHCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEE LGPAVNIYRAPMCGRNFEYMGEDPYLTSRICVGYIKGVQDQGVMATVKHFVANNSDYDRN ECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC NISNDIDERTLNEIYFPAYKAAIQEAEVGAIMTSYNLMNGIYTTENPWLLKEVLRNQWGF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHCCCC KGLVMSDWGSTHYCVPAARSGLDLEMAGGEKMNPKDMAYYLKTGDVTMDMVDEKVRHILR CEEEEECCCCCEEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCEEHHHHHHHHHHHHH ILIAFGFKDGTEADKSIALDDPQSVETALNVAREGLVLLKNENNILPINPQKYKHIIVTG HHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHCCEEEEECCCCEEECCCCCEEEEEEEC KNAHGYVHGGGSGAVVPFHYTNLFDGIQKEGKLNNVKVEYIDELDFMPSIMYTDDNLNEK CCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC GFHAEYFKNIHFEGAPVVKQTEKKINYSWAAGTELEGMPKDYFSVKWYSTMCVDETADYE CCCHHHHHCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCEE FTLGGDDGYKLFINDQPIIDDWTPGGFRTTNVTKTLKAGEKYHVRVEYYQQGGGAGICFL EEECCCCCEEEEECCCCCCCCCCCCCEEECCHHHHHHCCCEEEEEEEEEECCCCEEEEEE WKRKNETQNKFADYLNKADLVIACFGHSSDTEGEASDRTFELPEVDKKMLASLSGCKKPV EECCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCE IGIVNAGGNIEMQKWEPSLKGLIWGFYGGQEAGTAIGEALFGKVNPSGKLPMTFEKKWED EEEEECCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCC SPAYNSYHDPDKDKHVAYTEGIFIGYRGYDKLKREVQYPFGYGLSYTTFKLSNIVVSKPN CCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCC ADGTVEVTCRLANTGKRDGAQVIQAYVGKAENSPVERPQKELRKFEKIFLKAGESTTVKM CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE TLPKESFMYFDVNRTQFVTDPGIYNIMLGFSSRDIKAQKNIQYTL EECCCCEEEEECCCEEEEECCCEEEEEEECCCCCCCCCCCEEECC >Mature Secondary Structure MKQKRLTFLLLLISNLFCASAQKWYKPEIDLKVEELLSQMTVEEKLGYIGGIDWMYTKSI CCCHHHHHHHHHHHHHHHHCCHHHCCCCCCEEHHHHHHHHHHHHHCCHHCCCCCHHHCCH DRLGIHRMRMSDGPQGIGTKGKSTAYPATVTLAATWNENLAYQYGKALGRDCRARNINVI HHHCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEE LGPAVNIYRAPMCGRNFEYMGEDPYLTSRICVGYIKGVQDQGVMATVKHFVANNSDYDRN ECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC NISNDIDERTLNEIYFPAYKAAIQEAEVGAIMTSYNLMNGIYTTENPWLLKEVLRNQWGF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHCCCC KGLVMSDWGSTHYCVPAARSGLDLEMAGGEKMNPKDMAYYLKTGDVTMDMVDEKVRHILR CEEEEECCCCCEEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCEEHHHHHHHHHHHHH ILIAFGFKDGTEADKSIALDDPQSVETALNVAREGLVLLKNENNILPINPQKYKHIIVTG HHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHCCEEEEECCCCEEECCCCCEEEEEEEC KNAHGYVHGGGSGAVVPFHYTNLFDGIQKEGKLNNVKVEYIDELDFMPSIMYTDDNLNEK CCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC GFHAEYFKNIHFEGAPVVKQTEKKINYSWAAGTELEGMPKDYFSVKWYSTMCVDETADYE CCCHHHHHCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCEE FTLGGDDGYKLFINDQPIIDDWTPGGFRTTNVTKTLKAGEKYHVRVEYYQQGGGAGICFL EEECCCCCEEEEECCCCCCCCCCCCCEEECCHHHHHHCCCEEEEEEEEEECCCCEEEEEE WKRKNETQNKFADYLNKADLVIACFGHSSDTEGEASDRTFELPEVDKKMLASLSGCKKPV EECCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCE IGIVNAGGNIEMQKWEPSLKGLIWGFYGGQEAGTAIGEALFGKVNPSGKLPMTFEKKWED EEEEECCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCC SPAYNSYHDPDKDKHVAYTEGIFIGYRGYDKLKREVQYPFGYGLSYTTFKLSNIVVSKPN CCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCC ADGTVEVTCRLANTGKRDGAQVIQAYVGKAENSPVERPQKELRKFEKIFLKAGESTTVKM CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE TLPKESFMYFDVNRTQFVTDPGIYNIMLGFSSRDIKAQKNIQYTL EECCCCEEEEECCCEEEEECCCEEEEEEECCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537792 [H]