| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348645
Identifier: 29348645
GI number: 29348645
Start: 4126901
End: 4128157
Strand: Reverse
Name: 29348645
Synonym: BT_3236
Alternate gene names: NA
Gene position: 4128157-4126901 (Counterclockwise)
Preceding gene: 29348646
Following gene: 29348644
Centisome position: 65.94
GC content: 36.52
Gene sequence:
>1257_bases ATGAGAAAGATTAAAATATATGGCTTACTGACTTGCGTTTGCCTGATGATGCAATCGTGTCTGTTTAATGAAGATGATAT CTTTGATGAATCTTCTGCACAACGGGCTATAGCCTCCGTCAACGAATGTCAGGAGATTTTAAAGGGCGCAGCCAATGGGT GGTTACTCGAGTATTATACAGGAGAAGACGGAGAATATGGTGGCTTCAATGTTTTGGCACGATTTGATGGCAATAATGTA ATTATGGCTGCAGATTTCGCTACAGATAATTACGAAATTGGAGAAGAATCTACTTCCTTGTATAAAGTTGAATCATACCA GGGAACAGAATTAAGTTTTGATTCATACAATGAATTAATTCACGAATTCTGTGAACCGAGTGGTTATAATTCACCAGGAT ATGCCGGAGATTATGAGTTCGTCTTCAGAAGCGTTTCAAAAGAAAAGATCGTACTGACTGGGAAAAAACATGGAGTAACG TTGATCATGACACCTCTGCCTGCTGAAACAAATTGGCAAGAGAAACTGACCAATATTGCCAATGTCGTTTCACAGGCTTC ATATGTAACCTATAAGTTAATTGTGAATGGTCAGGAAATAACTAAAATGGGACAGGAAGAGCATGCCTTCTCAGTTACCA AAGTAGACGAAACCGGTGAAACAACCGTAAGTCTATATCCGTTCATATATACAGAGGAAGGCATTAAAATGTATGAACCA TTAGTAGTTAATGGAGTAGAAATAAACAACTTCAAATGGGATAATGAAAACCTTACATATATTTGTACAGATACAGGTGT AGATGCAAAAATAGAATTCTATTGTCCGGAAGGATATCTCAACTATTTAGGCAACTATATACTACAATTAGCAAATGGGC AACGTATACAACTTGAGCTCAAACAAAAAATGATAGGAAAATCATTTGCAATGAATTTTGCTTTGAGTGGTACTCCTATT GAATTTGTCTATAACTATAATATGACAACAGACTGTATTGATGTACCTTCTCAGACAGTTGGCGTATATCAAGGTTACAA CGTATTATTATATCCAGGAATTCCCGGAGGCAATTTCTATGCAGATGACTCAGCTGTATTCCAAGGACGTATTGCAAATA CAGATCCGCTTACAATTAAGTTCACTTATGTAAACAATCCTATTTGCACCCTTATGTTGCTGGTATATCAAAAAACAGAC GGTTGGTATGGATTCTCTACAATGTTCCAAGATGTAACATTGATAAAAGTTGATTAA
Upstream 100 bases:
>100_bases TTCCTGGGGACTTGATTTAGACAAATTGCGCGAAATTGTTTTGCGCCGGCAAAGTGAAATTACCGAATTAGATTTAAGTA CGCTTTAATAATTGTAGGAT
Downstream 100 bases:
>100_bases TTAACAAATAGCATATTATGAAGAAAATAACAAGCATATTTGCATTATTATTATGCGTATTCGTCTTCTCATGTAGTAAC GACGACGATAAAGAAACATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MRKIKIYGLLTCVCLMMQSCLFNEDDIFDESSAQRAIASVNECQEILKGAANGWLLEYYTGEDGEYGGFNVLARFDGNNV IMAADFATDNYEIGEESTSLYKVESYQGTELSFDSYNELIHEFCEPSGYNSPGYAGDYEFVFRSVSKEKIVLTGKKHGVT LIMTPLPAETNWQEKLTNIANVVSQASYVTYKLIVNGQEITKMGQEEHAFSVTKVDETGETTVSLYPFIYTEEGIKMYEP LVVNGVEINNFKWDNENLTYICTDTGVDAKIEFYCPEGYLNYLGNYILQLANGQRIQLELKQKMIGKSFAMNFALSGTPI EFVYNYNMTTDCIDVPSQTVGVYQGYNVLLYPGIPGGNFYADDSAVFQGRIANTDPLTIKFTYVNNPICTLMLLVYQKTD GWYGFSTMFQDVTLIKVD
Sequences:
>Translated_418_residues MRKIKIYGLLTCVCLMMQSCLFNEDDIFDESSAQRAIASVNECQEILKGAANGWLLEYYTGEDGEYGGFNVLARFDGNNV IMAADFATDNYEIGEESTSLYKVESYQGTELSFDSYNELIHEFCEPSGYNSPGYAGDYEFVFRSVSKEKIVLTGKKHGVT LIMTPLPAETNWQEKLTNIANVVSQASYVTYKLIVNGQEITKMGQEEHAFSVTKVDETGETTVSLYPFIYTEEGIKMYEP LVVNGVEINNFKWDNENLTYICTDTGVDAKIEFYCPEGYLNYLGNYILQLANGQRIQLELKQKMIGKSFAMNFALSGTPI EFVYNYNMTTDCIDVPSQTVGVYQGYNVLLYPGIPGGNFYADDSAVFQGRIANTDPLTIKFTYVNNPICTLMLLVYQKTD GWYGFSTMFQDVTLIKVD >Mature_418_residues MRKIKIYGLLTCVCLMMQSCLFNEDDIFDESSAQRAIASVNECQEILKGAANGWLLEYYTGEDGEYGGFNVLARFDGNNV IMAADFATDNYEIGEESTSLYKVESYQGTELSFDSYNELIHEFCEPSGYNSPGYAGDYEFVFRSVSKEKIVLTGKKHGVT LIMTPLPAETNWQEKLTNIANVVSQASYVTYKLIVNGQEITKMGQEEHAFSVTKVDETGETTVSLYPFIYTEEGIKMYEP LVVNGVEINNFKWDNENLTYICTDTGVDAKIEFYCPEGYLNYLGNYILQLANGQRIQLELKQKMIGKSFAMNFALSGTPI EFVYNYNMTTDCIDVPSQTVGVYQGYNVLLYPGIPGGNFYADDSAVFQGRIANTDPLTIKFTYVNNPICTLMLLVYQKTD GWYGFSTMFQDVTLIKVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47079; Mature: 47079
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKIKIYGLLTCVCLMMQSCLFNEDDIFDESSAQRAIASVNECQEILKGAANGWLLEYYT CCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE GEDGEYGGFNVLARFDGNNVIMAADFATDNYEIGEESTSLYKVESYQGTELSFDSYNELI CCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEECHHHHHHHH HEFCEPSGYNSPGYAGDYEFVFRSVSKEKIVLTGKKHGVTLIMTPLPAETNWQEKLTNIA HHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHH NVVSQASYVTYKLIVNGQEITKMGQEEHAFSVTKVDETGETTVSLYPFIYTEEGIKMYEP HHHHHCCEEEEEEEECCHHHHHCCCHHHCEEEEEECCCCCCEEEEEEEEEECCCCEEECC LVVNGVEINNFKWDNENLTYICTDTGVDAKIEFYCPEGYLNYLGNYILQLANGQRIQLEL EEEECEEECCEEECCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHEECCCCCEEEEEE KQKMIGKSFAMNFALSGTPIEFVYNYNMTTDCIDVPSQTVGVYQGYNVLLYPGIPGGNFY HHHHHCHHHEEEEEECCCCEEEEEECCCCCHHCCCCCCCEEEECCCCEEEECCCCCCCEE ADDSAVFQGRIANTDPLTIKFTYVNNPICTLMLLVYQKTDGWYGFSTMFQDVTLIKVD CCCCCEEECCCCCCCCEEEEEEEECCCHHHHEEEEEECCCCCEEHHHHHCCEEEEEEC >Mature Secondary Structure MRKIKIYGLLTCVCLMMQSCLFNEDDIFDESSAQRAIASVNECQEILKGAANGWLLEYYT CCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE GEDGEYGGFNVLARFDGNNVIMAADFATDNYEIGEESTSLYKVESYQGTELSFDSYNELI CCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEECHHHHHHHH HEFCEPSGYNSPGYAGDYEFVFRSVSKEKIVLTGKKHGVTLIMTPLPAETNWQEKLTNIA HHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHH NVVSQASYVTYKLIVNGQEITKMGQEEHAFSVTKVDETGETTVSLYPFIYTEEGIKMYEP HHHHHCCEEEEEEEECCHHHHHCCCHHHCEEEEEECCCCCCEEEEEEEEEECCCCEEECC LVVNGVEINNFKWDNENLTYICTDTGVDAKIEFYCPEGYLNYLGNYILQLANGQRIQLEL EEEECEEECCEEECCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHEECCCCCEEEEEE KQKMIGKSFAMNFALSGTPIEFVYNYNMTTDCIDVPSQTVGVYQGYNVLLYPGIPGGNFY HHHHHCHHHEEEEEECCCCEEEEEECCCCCHHCCCCCCCEEEECCCCEEEECCCCCCCEE ADDSAVFQGRIANTDPLTIKFTYVNNPICTLMLLVYQKTDGWYGFSTMFQDVTLIKVD CCCCCEEECCCCCCCCEEEEEEEECCCHHHHEEEEEECCCCCEEHHHHHCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA