| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348542
Identifier: 29348542
GI number: 29348542
Start: 3995977
End: 3997950
Strand: Reverse
Name: 29348542
Synonym: BT_3133
Alternate gene names: NA
Gene position: 3997950-3995977 (Counterclockwise)
Preceding gene: 29348543
Following gene: 29348541
Centisome position: 63.86
GC content: 44.83
Gene sequence:
>1974_bases ATGCTTCTTCTGTTTCTTTTCATTTCCAACTGTGCCAGTGGAGACAAGATTTTCTCTACCGATGTATGGAATATAACTTA CGATGATCAGCAAGGGGGAATAGCACTCACTTATAAGTCAAAAAATATTTGTAACGGAATGTATGCTTCCTATCAATGGG AAGGGAAGGAGATCAAGACAAGTGACTATGCCCGCCATAAAATCAGTACGGGCAAAGTTTCCGATTCTTTCGGGAAAGGA CATATATATAAGGTGGAGTATACGGATAAGGAGCTTCCGAAGCTGACTCAGTATTTCTATCTTTATCCGGGTAAGGAATA TATACTGACCGATTTTACGGTCGAAGCGAAAGAGGAAATCCGTTCCGGCAGAATGGCTCCTGTTAATGTCGATTCTATAT CCGGATTCTTGCAGGCAGGTGATAACCGTGCTCTTTTTGTTCCGTTCGACAATGACAAATGGATCAGATATCAGTCTCAC CCGCTTGGTTTCGATACATTGGTGAGTTATGAAGTGACAGCCATATTCAATAATGAAAGCCGGAACGGTCTGGTGATCGG CTCCGTAGAACATGATAACTGGAAAACAGGTATTTCAATAGGTAAGGGGGATCGTGATAACATTGGTTCGCTGGTATGTT ATGGGGGCATAGCAGATGAGCAGACTCGTGACGTAAAGGCTCACGGTGCATTAGCAGGTAAAAAGATTAAATCCCCTAAA GTCTTTTTGGGTTTCTTTGAAGATTGGTGCGATGGACTTGAAGCGTATGCAAAAGCCAACGCTGTAATTGCCCCTCCCAA AGCATGGGAGAAAGCTGTTCCATTTGGTTGGAACAGCTGGGGGGCATTACAATTCAATCTGACTTATGAGAAAGCGATGG AAGTCTCCGATTATTTCAAGGAGAATCTGCAGAATAATCATTTTGTAAACCCTGATCAGACTGTCTATATCGGTCTGGAT TCCGGTTGGGACTGTATGAATGAGGAGCAACTGAAGTCATTTATCGAAAAATGTAAGTCGAACGGACAGATCGGTGGTAT CTACTGGACTCCGTTCACCGACTGGGCACGCGATCCGGAACGGACGGTAGATGCCGCACCGGAATATAAATACAAAGATA TCTATCTCTATGCCAACGGAAAGCCGCAGGAACTGGACGGCGCTTATGCAGTCGATCCAACGCATCCGGCAGTGGAAGCT ATGATGAAGAAGACTTCCGGTTTGTTCCACCGTGCAGGATTCGAGTATGTGAAGATGGACTTCATGACACACGGTGCGAT GGAAGCGGACAAATGGTATAATCCTGAGATTACCACAGGTATACAGGGATATAATTATGGCATGAAACTGCTCAATCAAT ATTTTGGAGATATGTATATCAATCTCTCCATTTCTCCTGTCTTCCCTGCCCAGTATGCGCAGTCACGCAGAATAGCCTGT GATGCGTGGAATCAGATCAAGGATACCGAATATACATTGAACGCTCTTTCATACGGCTGGTGGCAGAAGTATATCTATCA ATATAACGATGCCGATCATATTGTACTGAGAGATGCTACCGACGGAGAAAACCGTGCCCGTATTACTTCGGGTGTCATTA CGGGTATTTACATTACAGGAGACGATTTCAGTGCGGGAGGAGGAAAAGACGCCAAAGAAAAGTCACAGAAATATCTGACC AATGCGGCAGTGAATGCAGTAGCGACAGGAGAAGTGTTCCGTCCCGTGGAAGGAAACGGAGAGAAGTCGGAACATATCTT TGTAAGGAAGACACCCGATGGTCGTTTCCATTGTGCGGTATTCAACTACTCGGACCAGGAACAGACAACTGTGCTTTCGT TAGAAAGAATAGGATTGGACAAGGCACGCGGCTATCAGGTGAAAGAGTTGTGGAGCGGCAATGAGACTTTTGCCACAGGA CAGCTTGAAGTGACCGTACCCTCCAAAGACGTGCAATTACTTGAATTTAAATAA
Upstream 100 bases:
>100_bases AGGTTTCTTATTCGGGTATGCTTTATTTTTTTACATAAGAACATTGTACCATATGAAAAACCAAAAGCTACTACTAAAAA AAATGTCGGGAGTATCCCTG
Downstream 100 bases:
>100_bases CCGAAGAAATGAAAAAATATCAATTAACACTCTTATCGTTATGTGTGGCAGCCTTTGCGCAAGCGAAGGTCACATTGCCG TCATTCTTTACCGATAATAT
Product: alpha-galactosidase
Products: NA
Alternate protein names: Glycoside Hydrolase/PKD; Coagulation Factor 5/8 Type Domain-Containing Protein; Coagulation Factor 5/8 Type Domain Protein
Number of amino acids: Translated: 657; Mature: 657
Protein sequence:
>657_residues MLLLFLFISNCASGDKIFSTDVWNITYDDQQGGIALTYKSKNICNGMYASYQWEGKEIKTSDYARHKISTGKVSDSFGKG HIYKVEYTDKELPKLTQYFYLYPGKEYILTDFTVEAKEEIRSGRMAPVNVDSISGFLQAGDNRALFVPFDNDKWIRYQSH PLGFDTLVSYEVTAIFNNESRNGLVIGSVEHDNWKTGISIGKGDRDNIGSLVCYGGIADEQTRDVKAHGALAGKKIKSPK VFLGFFEDWCDGLEAYAKANAVIAPPKAWEKAVPFGWNSWGALQFNLTYEKAMEVSDYFKENLQNNHFVNPDQTVYIGLD SGWDCMNEEQLKSFIEKCKSNGQIGGIYWTPFTDWARDPERTVDAAPEYKYKDIYLYANGKPQELDGAYAVDPTHPAVEA MMKKTSGLFHRAGFEYVKMDFMTHGAMEADKWYNPEITTGIQGYNYGMKLLNQYFGDMYINLSISPVFPAQYAQSRRIAC DAWNQIKDTEYTLNALSYGWWQKYIYQYNDADHIVLRDATDGENRARITSGVITGIYITGDDFSAGGGKDAKEKSQKYLT NAAVNAVATGEVFRPVEGNGEKSEHIFVRKTPDGRFHCAVFNYSDQEQTTVLSLERIGLDKARGYQVKELWSGNETFATG QLEVTVPSKDVQLLEFK
Sequences:
>Translated_657_residues MLLLFLFISNCASGDKIFSTDVWNITYDDQQGGIALTYKSKNICNGMYASYQWEGKEIKTSDYARHKISTGKVSDSFGKG HIYKVEYTDKELPKLTQYFYLYPGKEYILTDFTVEAKEEIRSGRMAPVNVDSISGFLQAGDNRALFVPFDNDKWIRYQSH PLGFDTLVSYEVTAIFNNESRNGLVIGSVEHDNWKTGISIGKGDRDNIGSLVCYGGIADEQTRDVKAHGALAGKKIKSPK VFLGFFEDWCDGLEAYAKANAVIAPPKAWEKAVPFGWNSWGALQFNLTYEKAMEVSDYFKENLQNNHFVNPDQTVYIGLD SGWDCMNEEQLKSFIEKCKSNGQIGGIYWTPFTDWARDPERTVDAAPEYKYKDIYLYANGKPQELDGAYAVDPTHPAVEA MMKKTSGLFHRAGFEYVKMDFMTHGAMEADKWYNPEITTGIQGYNYGMKLLNQYFGDMYINLSISPVFPAQYAQSRRIAC DAWNQIKDTEYTLNALSYGWWQKYIYQYNDADHIVLRDATDGENRARITSGVITGIYITGDDFSAGGGKDAKEKSQKYLT NAAVNAVATGEVFRPVEGNGEKSEHIFVRKTPDGRFHCAVFNYSDQEQTTVLSLERIGLDKARGYQVKELWSGNETFATG QLEVTVPSKDVQLLEFK >Mature_657_residues MLLLFLFISNCASGDKIFSTDVWNITYDDQQGGIALTYKSKNICNGMYASYQWEGKEIKTSDYARHKISTGKVSDSFGKG HIYKVEYTDKELPKLTQYFYLYPGKEYILTDFTVEAKEEIRSGRMAPVNVDSISGFLQAGDNRALFVPFDNDKWIRYQSH PLGFDTLVSYEVTAIFNNESRNGLVIGSVEHDNWKTGISIGKGDRDNIGSLVCYGGIADEQTRDVKAHGALAGKKIKSPK VFLGFFEDWCDGLEAYAKANAVIAPPKAWEKAVPFGWNSWGALQFNLTYEKAMEVSDYFKENLQNNHFVNPDQTVYIGLD SGWDCMNEEQLKSFIEKCKSNGQIGGIYWTPFTDWARDPERTVDAAPEYKYKDIYLYANGKPQELDGAYAVDPTHPAVEA MMKKTSGLFHRAGFEYVKMDFMTHGAMEADKWYNPEITTGIQGYNYGMKLLNQYFGDMYINLSISPVFPAQYAQSRRIAC DAWNQIKDTEYTLNALSYGWWQKYIYQYNDADHIVLRDATDGENRARITSGVITGIYITGDDFSAGGGKDAKEKSQKYLT NAAVNAVATGEVFRPVEGNGEKSEHIFVRKTPDGRFHCAVFNYSDQEQTTVLSLERIGLDKARGYQVKELWSGNETFATG QLEVTVPSKDVQLLEFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74266; Mature: 74266
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLLFLFISNCASGDKIFSTDVWNITYDDQQGGIALTYKSKNICNGMYASYQWEGKEIKT CEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCEECC SDYARHKISTGKVSDSFGKGHIYKVEYTDKELPKLTQYFYLYPGKEYILTDFTVEAKEEI CCHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHEEEEEEECCCEEEEEEEEEHHHHHH RSGRMAPVNVDSISGFLQAGDNRALFVPFDNDKWIRYQSHPLGFDTLVSYEVTAIFNNES HCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCHHEEEEEEEEEEECCC RNGLVIGSVEHDNWKTGISIGKGDRDNIGSLVCYGGIADEQTRDVKAHGALAGKKIKSPK CCCEEEEEEECCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCE VFLGFFEDWCDGLEAYAKANAVIAPPKAWEKAVPFGWNSWGALQFNLTYEKAMEVSDYFK EEEEEHHHHHHHHHHHHHCCEEECCCHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHH ENLQNNHFVNPDQTVYIGLDSGWDCMNEEQLKSFIEKCKSNGQIGGIYWTPFTDWARDPE HHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCH RTVDAAPEYKYKDIYLYANGKPQELDGAYAVDPTHPAVEAMMKKTSGLFHRAGFEYVKMD HHCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHCCHHHHCCCCEEEEE FMTHGAMEADKWYNPEITTGIQGYNYGMKLLNQYFGDMYINLSISPVFPAQYAQSRRIAC EHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCEEE DAWNQIKDTEYTLNALSYGWWQKYIYQYNDADHIVLRDATDGENRARITSGVITGIYITG CCCCCCCCCEEEHHHHHHHHHHHHHEEECCCCEEEEECCCCCCCCEEEEECEEEEEEEEC DDFSAGGGKDAKEKSQKYLTNAAVNAVATGEVFRPVEGNGEKSEHIFVRKTPDGRFHCAV CCCCCCCCCCHHHHHHHHHHHHHHCEEECCCEECCCCCCCCCCCEEEEEECCCCCEEEEE FNYSDQEQTTVLSLERIGLDKARGYQVKELWSGNETFATGQLEVTVPSKDVQLLEFK EECCCCCCEEEEEHHHCCCCHHCCEEEEHHHCCCCEEEECEEEEEECCCCCEEEEEC >Mature Secondary Structure MLLLFLFISNCASGDKIFSTDVWNITYDDQQGGIALTYKSKNICNGMYASYQWEGKEIKT CEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCEECC SDYARHKISTGKVSDSFGKGHIYKVEYTDKELPKLTQYFYLYPGKEYILTDFTVEAKEEI CCHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHEEEEEEECCCEEEEEEEEEHHHHHH RSGRMAPVNVDSISGFLQAGDNRALFVPFDNDKWIRYQSHPLGFDTLVSYEVTAIFNNES HCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCHHEEEEEEEEEEECCC RNGLVIGSVEHDNWKTGISIGKGDRDNIGSLVCYGGIADEQTRDVKAHGALAGKKIKSPK CCCEEEEEEECCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCE VFLGFFEDWCDGLEAYAKANAVIAPPKAWEKAVPFGWNSWGALQFNLTYEKAMEVSDYFK EEEEEHHHHHHHHHHHHHCCEEECCCHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHH ENLQNNHFVNPDQTVYIGLDSGWDCMNEEQLKSFIEKCKSNGQIGGIYWTPFTDWARDPE HHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCH RTVDAAPEYKYKDIYLYANGKPQELDGAYAVDPTHPAVEAMMKKTSGLFHRAGFEYVKMD HHCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHCCHHHHCCCCEEEEE FMTHGAMEADKWYNPEITTGIQGYNYGMKLLNQYFGDMYINLSISPVFPAQYAQSRRIAC EHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCEEE DAWNQIKDTEYTLNALSYGWWQKYIYQYNDADHIVLRDATDGENRARITSGVITGIYITG CCCCCCCCCEEEHHHHHHHHHHHHHEEECCCCEEEEECCCCCCCCEEEEECEEEEEEEEC DDFSAGGGKDAKEKSQKYLTNAAVNAVATGEVFRPVEGNGEKSEHIFVRKTPDGRFHCAV CCCCCCCCCCHHHHHHHHHHHHHHCEEECCCEECCCCCCCCCCCEEEEEECCCCCEEEEE FNYSDQEQTTVLSLERIGLDKARGYQVKELWSGNETFATGQLEVTVPSKDVQLLEFK EECCCCCCEEEEEHHHCCCCHHCCEEEEHHHCCCCEEEECEEEEEECCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA