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The map label for this gene is fecI [C]

Identifier: 29348419

GI number: 29348419

Start: 3801071

End: 3801646

Strand: Reverse

Name: fecI [C]

Synonym: BT_3010

Alternate gene names: 29348419

Gene position: 3801646-3801071 (Counterclockwise)

Preceding gene: 29348427

Following gene: 29348418

Centisome position: 60.73

GC content: 37.15

Gene sequence:

>576_bases
ATGAACGAAAGAGAAAGAGTATTGGCTATTAAGGGCGGTGATCATCAAGCGTTTATAGATTTGTATAACGAGTATTGGAG
TCAGGTTTATGACTTTAGCCGATTGTACATCGCTACAATTGCTGATGCAGAGGAAATTGTTCAGGATGTGTTTGTGAAGT
TGTGGGAATCAAGGCATTTACTGAAGGAAGATGAAAATATCAAAGGTTTTCTCTTTATTGTTACCCGAAACATCGTATTT
AATAAAAATAAGAAGAGAGTAAATGAGAATCTTTTCAAAACCTCTGTTTTGGTAGCCTATGGAAACGAAGGTTATTATAA
CTCCACTACTGTGGAGGAAGATTATTGCGCTTCTCAACTAAAAATATTCATTGATCGGTTAATCAATTCACTTCCTGAAC
AACAAAGAAAGTGTTTCTTGTTGAGCCGTGAAGAAAGCCTGAGTTACAAGGAGATAGCCGAGAGGCTTGGTATTAGTCAG
AAGACTGTAGAAATACATATGGGTAAGGCCTTGAAATTCTTGAAAGATAAGGTGAAGCGAGGCTGGGAGATTCTATTGTC
GCTTCTTTCATTTTAG

Upstream 100 bases:

>100_bases
CCATATTACATTTACCCCTATCGGATATAAAAAAAATGTGTTTTATTTTTGTATCTTTTAAATAATGTATAGCTTTGTTG
TCACTAATATTTGCACAAAT

Downstream 100 bases:

>100_bases
TTATAAAAATAAGACATTCCTTCTTTCTCATTATTTATATAGTGTCGGAATATACTTATCTTCTTTCTTGCTGTTTTTAG
CAGGCTGTTACTTTATCTGT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor; Sigma-70 Region 4 Family; RNA Polymerase Sigma-H Factor; Sigma Factor; RNA Polymerase Sigma-W Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; RNA Polymerase Sigma-70 Region; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKGFLFIVTRNIVF
NKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQ
KTVEIHMGKALKFLKDKVKRGWEILLSLLSF

Sequences:

>Translated_191_residues
MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKGFLFIVTRNIVF
NKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQ
KTVEIHMGKALKFLKDKVKRGWEILLSLLSF
>Mature_191_residues
MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKGFLFIVTRNIVF
NKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQ
KTVEIHMGKALKFLKDKVKRGWEILLSLLSF

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22490; Mature: 22490

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHL
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LKEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQL
HCCCCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHH
KIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVKR
HHHHHHHHHHCCHHHHHEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
GWEILLSLLSF
HHHHHHHHHCC
>Mature Secondary Structure
MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHL
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LKEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQL
HCCCCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHH
KIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVKR
HHHHHHHHHHCCHHHHHEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
GWEILLSLLSF
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA