| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348288
Identifier: 29348288
GI number: 29348288
Start: 3598957
End: 3600219
Strand: Reverse
Name: 29348288
Synonym: BT_2879
Alternate gene names: NA
Gene position: 3600219-3598957 (Counterclockwise)
Preceding gene: 29348289
Following gene: 29348287
Centisome position: 57.51
GC content: 34.13
Gene sequence:
>1263_bases ATGGAACATATATATAAGTTGCTGCGCTCTTTTAAATGGGACTGTGCTAAATATCTCTACAAGAATACTCTGAACTTTAA AGTTAAGAGATTAAGACGAAAGAAAAATATAAGAGTTCTGTTTGCTGTGGCGGAGAGTGCTACCTGGAAAAGCGATTGTC TTTATAAAGCGATGGCGGAACATCCCAGATTTACTCCTTCTATTCTTGTTTTACCTGATGAACAGAAGGAAAAAACTCTG TTGAAAGAAGAAGTTGATTCATGTTTTAATTTATTTTGTAGAAAAGGGTATGCTTGTACTTATCCTTATCAAAATGGAAA ACTGATTAATATTCGGAAGAAATTGAAACCGGATATCATTTTCTATCAAAAACCTTATACTTTTTATCCTAAGAGTCTTT TGTATTATAAAAATATGAATGCTTTATTTTGTTATACAAATTATGCTTTTCATAGCTTACTGACAGATTGGGCTAATGAT AATGAATTCTTTAGATTGATGTGGCAGAATTATTATGAAAATGAGTCTGCTAATGTTGATTTGAAGAAAAAGTTTGCAGG GATATTCTCAAATATCGTAGTTACGGGCTTGCCTGTAACAGACTTATTTCTGACTGAGAAACATGAAGATAAGTGGAAAA AAACAGATAAGAGTCGTAAACGGATTATTTGGGCACCACATTTCTCAATATCTGATGGTGGCTGTTTGAACTATTCAACT TTCTTATCTATTGCGGAAGAACTGTTAGAATTTATAAAGAACACTCAATTACCTGTTCAGATGGCTTTTAAGCCTCATCC TTTGCTAAAGAGTCAACTATATAATTATTCTTCATGGGGGAAAGAGAAAACAGACGAGTATTATGCGGCATGGGAATTTC TGCCGAATGCTCAATTGGAGACCAATGAGTATGTTGATTTGTTTATGACTTCGGATGCCATGATTCATGATTGTGGCTCT TTTACGATTGAATATCATCATACATTGAAACCTGTAATGTATCTGGTCAATGGAAAAGAGCATACTGCAACGATGAATTC TTTTGCCAAGGCAGCCTATGACCTGCATTATAAGGGGCAGACTATCCAAGATATCCGGAATTTTATAGAATGTACAGTAT TGGAAAACTCTGATTACTTACTAGAAAAAAGAAAAAACTTTTTTAAGTCGTACTTATTGCCGCCCCATAATCAGTCTGCC ACAGAAAATATAATCCATGCTATTTTGGGAACAGGATATTATACCGAAAAAAAACAGAGGTGA
Upstream 100 bases:
>100_bases GCGATATTTAATACTGAGAAAATAAATAAAATAGGCTGGTTCCCCCAATGGAAGCTTGAAGAAGGCGTTTCACATACACT TAATACTTTAATATCTGTTG
Downstream 100 bases:
>100_bases ATAGTGATATTCGTTCAATGGGCATTTCCGGTGTGAAATGGGCTTCTATAGGACGTTTCTCTTCGCAGGGAATAAGTTTT GTCCTGGGACTTATTTTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MEHIYKLLRSFKWDCAKYLYKNTLNFKVKRLRRKKNIRVLFAVAESATWKSDCLYKAMAEHPRFTPSILVLPDEQKEKTL LKEEVDSCFNLFCRKGYACTYPYQNGKLINIRKKLKPDIIFYQKPYTFYPKSLLYYKNMNALFCYTNYAFHSLLTDWAND NEFFRLMWQNYYENESANVDLKKKFAGIFSNIVVTGLPVTDLFLTEKHEDKWKKTDKSRKRIIWAPHFSISDGGCLNYST FLSIAEELLEFIKNTQLPVQMAFKPHPLLKSQLYNYSSWGKEKTDEYYAAWEFLPNAQLETNEYVDLFMTSDAMIHDCGS FTIEYHHTLKPVMYLVNGKEHTATMNSFAKAAYDLHYKGQTIQDIRNFIECTVLENSDYLLEKRKNFFKSYLLPPHNQSA TENIIHAILGTGYYTEKKQR
Sequences:
>Translated_420_residues MEHIYKLLRSFKWDCAKYLYKNTLNFKVKRLRRKKNIRVLFAVAESATWKSDCLYKAMAEHPRFTPSILVLPDEQKEKTL LKEEVDSCFNLFCRKGYACTYPYQNGKLINIRKKLKPDIIFYQKPYTFYPKSLLYYKNMNALFCYTNYAFHSLLTDWAND NEFFRLMWQNYYENESANVDLKKKFAGIFSNIVVTGLPVTDLFLTEKHEDKWKKTDKSRKRIIWAPHFSISDGGCLNYST FLSIAEELLEFIKNTQLPVQMAFKPHPLLKSQLYNYSSWGKEKTDEYYAAWEFLPNAQLETNEYVDLFMTSDAMIHDCGS FTIEYHHTLKPVMYLVNGKEHTATMNSFAKAAYDLHYKGQTIQDIRNFIECTVLENSDYLLEKRKNFFKSYLLPPHNQSA TENIIHAILGTGYYTEKKQR >Mature_420_residues MEHIYKLLRSFKWDCAKYLYKNTLNFKVKRLRRKKNIRVLFAVAESATWKSDCLYKAMAEHPRFTPSILVLPDEQKEKTL LKEEVDSCFNLFCRKGYACTYPYQNGKLINIRKKLKPDIIFYQKPYTFYPKSLLYYKNMNALFCYTNYAFHSLLTDWAND NEFFRLMWQNYYENESANVDLKKKFAGIFSNIVVTGLPVTDLFLTEKHEDKWKKTDKSRKRIIWAPHFSISDGGCLNYST FLSIAEELLEFIKNTQLPVQMAFKPHPLLKSQLYNYSSWGKEKTDEYYAAWEFLPNAQLETNEYVDLFMTSDAMIHDCGS FTIEYHHTLKPVMYLVNGKEHTATMNSFAKAAYDLHYKGQTIQDIRNFIECTVLENSDYLLEKRKNFFKSYLLPPHNQSA TENIIHAILGTGYYTEKKQR
Specific function: Unknown
COG id: COG1887
COG function: function code M; Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49743; Mature: 49743
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHIYKLLRSFKWDCAKYLYKNTLNFKVKRLRRKKNIRVLFAVAESATWKSDCLYKAMAE CHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHC HPRFTPSILVLPDEQKEKTLLKEEVDSCFNLFCRKGYACTYPYQNGKLINIRKKLKPDII CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEHHHCCCCEE FYQKPYTFYPKSLLYYKNMNALFCYTNYAFHSLLTDWANDNEFFRLMWQNYYENESANVD EEECCCCCCCCCEEEEECCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCH LKKKFAGIFSNIVVTGLPVTDLFLTEKHEDKWKKTDKSRKRIIWAPHFSISDGGCLNYST HHHHHHHHHHHHHHCCCCHHHHEEECCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHH FLSIAEELLEFIKNTQLPVQMAFKPHPLLKSQLYNYSSWGKEKTDEYYAAWEFLPNAQLE HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCC TNEYVDLFMTSDAMIHDCGSFTIEYHHTLKPVMYLVNGKEHTATMNSFAKAAYDLHYKGQ CCCEEEEEEECCHHEECCCCEEEEEEHHHCEEEEEECCCHHHHHHHHHHHHHHHEEECCC TIQDIRNFIECTVLENSDYLLEKRKNFFKSYLLPPHNQSATENIIHAILGTGYYTEKKQR HHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MEHIYKLLRSFKWDCAKYLYKNTLNFKVKRLRRKKNIRVLFAVAESATWKSDCLYKAMAE CHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHC HPRFTPSILVLPDEQKEKTLLKEEVDSCFNLFCRKGYACTYPYQNGKLINIRKKLKPDII CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEHHHCCCCEE FYQKPYTFYPKSLLYYKNMNALFCYTNYAFHSLLTDWANDNEFFRLMWQNYYENESANVD EEECCCCCCCCCEEEEECCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCH LKKKFAGIFSNIVVTGLPVTDLFLTEKHEDKWKKTDKSRKRIIWAPHFSISDGGCLNYST HHHHHHHHHHHHHHCCCCHHHHEEECCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHH FLSIAEELLEFIKNTQLPVQMAFKPHPLLKSQLYNYSSWGKEKTDEYYAAWEFLPNAQLE HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCC TNEYVDLFMTSDAMIHDCGSFTIEYHHTLKPVMYLVNGKEHTATMNSFAKAAYDLHYKGQ CCCEEEEEEECCHHEECCCCEEEEEEHHHCEEEEEECCCHHHHHHHHHHHHHHHEEECCC TIQDIRNFIECTVLENSDYLLEKRKNFFKSYLLPPHNQSATENIIHAILGTGYYTEKKQR HHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA