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The map label for this gene is xerC [H]

Identifier: 29348151

GI number: 29348151

Start: 3396070

End: 3396951

Strand: Reverse

Name: xerC [H]

Synonym: BT_2742

Alternate gene names: 29348151

Gene position: 3396951-3396070 (Counterclockwise)

Preceding gene: 29348156

Following gene: 29348150

Centisome position: 54.26

GC content: 40.48

Gene sequence:

>882_bases
ATGTTAATTAAATCTTTTCTTGATTACCTCCGGTATGAGCGGAACTATTCCGAAAAAACCGTTCTGGCGTATGGCGAGGA
TATAAAGCAACTACAGGAGTTTGCTCAGGAAGAGTACGGAAAGTTTGATCCGTTGGAAGTGGAAGGTGAACTGATTCGTG
AATGGATTGTTTCATTAATGGATAGGGGATATACTTCAACTTCTGTAAATCGAAAGCTAAGTTCGCTCCGGTCGTTCTAT
AAGTATCTTTTAAGGCAAGGAGAGGTGACAGTAGATCCGTTACGAAAAATAACAGGACCTAAAAATAAGAAGCCGTTACC
TGCTTTTCTGAAAGAAAGCGAAATGGACAAGTTGCTGGATGATACGGATTTTGGCGAAGGATTTAAAGGTTGTCGTGATC
GGTTGATTATTGGAGTGTTTTATGCTACAGGCATAAGACTTTCGGAATTGATAGGTCTGGATGATAAGGATGTAGATTTT
TCCGCTTCTCTTTTGAAAGTAACCGGGAAAAGAAACAAGCAGCGGCTAATACCGTTCGGTGATGAACTGAAAGAGTTGAT
GCTTGAATATATTAATGTAAGAAACGAAACGATTCCGGAAAGGTCGGAAGCTTTCTTTGTTAAAGAGGATGGTGAGCGGC
TTTATAAGAATCTGGTCTATAATTTAGTGAAACGGAACCTGTCAAAGGTGGCGACGCTGAAAAAAAGAAGTCCTCACGTG
CTGAGGCATACTTTTGCTACCACAATGCTGAATAATGATGCAGAACTGGGTGCGGTAAAAGAACTTTTGGGTCACGAGAG
TGTTGCAACTACCGAGATCTATACGCATGCCACATTTGAAGAACTTAAAAAAGTGTATAAACAAGCTCATCCAAGAGCTT
AA

Upstream 100 bases:

>100_bases
CAACAACTTCAGCAAGTAGAAGATTAATAATTCGTAATTTCCTTTGAATTATTGAATTCTTTTCATACATTCGTTGCACG
ATTTTAGATGTAGCGATATT

Downstream 100 bases:

>100_bases
AAAAAAGGAGGTAAGTATGGATATTAGAATTCAATCAATTCACTTTGATGCGTCAGAGCAATTGCAGGCATTTATTCAGA
AGAAAGTGTCTAAGTTGGAA

Product: integrase, site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MLIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMDRGYTSTSVNRKLSSLRSFY
KYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDDTDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDF
SASLLKVTGKRNKQRLIPFGDELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHV
LRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA

Sequences:

>Translated_293_residues
MLIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMDRGYTSTSVNRKLSSLRSFY
KYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDDTDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDF
SASLLKVTGKRNKQRLIPFGDELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHV
LRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA
>Mature_293_residues
MLIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMDRGYTSTSVNRKLSSLRSFY
KYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDDTDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDF
SASLLKVTGKRNKQRLIPFGDELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHV
LRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=291, Percent_Identity=33.6769759450172, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1789261, Length=295, Percent_Identity=32.8813559322034, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1790768, Length=182, Percent_Identity=22.5274725274725, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33938; Mature: 33938

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLM
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
DRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLD
HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
DTDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
DELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHV
HHHHHHHHHHHHHCCCCCCCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA
HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLM
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
DRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLD
HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
DTDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
DELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHV
HHHHHHHHHHHHHCCCCCCCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA
HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA