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The map label for this gene is xerD [C]

Identifier: 29348044

GI number: 29348044

Start: 3288975

End: 3289967

Strand: Reverse

Name: xerD [C]

Synonym: BT_2634

Alternate gene names: 29348044

Gene position: 3289967-3288975 (Counterclockwise)

Preceding gene: 29348045

Following gene: 29348038

Centisome position: 52.55

GC content: 39.58

Gene sequence:

>993_bases
ATGAACAAGCAAGAAAAATACTCATTTGTAGGTTACTGGTTCATGAGATATCTATCTGAATATATACCGGTAATAAAGAA
TCAATCTCATAATACGCTCACCAGTTATCGTGACTACTATATGCAGTATCTACCTTTTGTAGCCAAGAGAACCGGCAAAC
ATGCCGATAAACTTTTGATTACGGATCTCACTGTCGAGAGGACCAATGCTTTTTTGAATCATATAGAGACAGACAAGGGC
TGTACTATTCAAACCCGTAACCAAAGGCTTACCGCAATCAAGTCTTTCGTCCATTATGTGTACAATAATGCACCTGAATA
TATGGAATGGAGCCGATTGATGAGCACTATACCGATGAAGAAAGTGAAGGTAAAAGTCATTGAAGGGAGCGTATTGCCAG
CCGTGTCTTATCTTGACAAGAGAGAGATGGATGCGTTGCTTAATACTCCTGACCGACAAACAGTACAAGGCAGGAAAGAT
TATGCAATGTTACTTTTCTTGTATAACACTGGAGTTCGAGCCTCTGAGGCGGCTTCGCTAACAATAGGTAGCATTATTTA
TGATGATGCTTCGTGTCCGTTGGTAAGAATTTATGGTAAGGGGAATAAAAGCCGCACATGCCCCTTATGGAATAGAACAT
TAAACGCTATAAAACCATTTATGGCCGGCAGACGTGAAACAGAAAGAGTCTTCTTGAACAGATACGGAAATCCCATGACC
AGATTCGGTATTTACGAATTACTGGAAAGGAATGTCATAAAGGCTACGGCCACTGCACCAACTCTTGCAAAGAAAAGAGT
GAGTCCTCATACTCTTAGACATACAGCAGCATGTCATTTATATGAATCTGGAAATGATATCGTTACCATCCAGTCCTGGT
TAGGCCATGTCTCATTAAATACTACCAATATATATACAGAGGTAAGTTTACAAATGAAAGAAAAGGCTATTATGCTATGG
ACTATAGATGGTGAAGAAAATGCTACCAAGTAA

Upstream 100 bases:

>100_bases
ACCTTGGTCATACGAGCATAAATACGGCTGTCTATGTGTCTATGACCAATGAATTATTGAAGGAAGCAGGTCGCAAGTTT
GAATCATGTGTATTGAAATT

Downstream 100 bases:

>100_bases
TGGAAGAAGAATAAAGGCATACTCAACTTCCTTAACTCGCTCTAGCCTAAAAAATATGTTGGTATCAAATTATATAATCT
GTTTAATGTCAGATATATAC

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MNKQEKYSFVGYWFMRYLSEYIPVIKNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTNAFLNHIETDKG
CTIQTRNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEGSVLPAVSYLDKREMDALLNTPDRQTVQGRKD
YAMLLFLYNTGVRASEAASLTIGSIIYDDASCPLVRIYGKGNKSRTCPLWNRTLNAIKPFMAGRRETERVFLNRYGNPMT
RFGIYELLERNVIKATATAPTLAKKRVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVSLQMKEKAIMLW
TIDGEENATK

Sequences:

>Translated_330_residues
MNKQEKYSFVGYWFMRYLSEYIPVIKNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTNAFLNHIETDKG
CTIQTRNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEGSVLPAVSYLDKREMDALLNTPDRQTVQGRKD
YAMLLFLYNTGVRASEAASLTIGSIIYDDASCPLVRIYGKGNKSRTCPLWNRTLNAIKPFMAGRRETERVFLNRYGNPMT
RFGIYELLERNVIKATATAPTLAKKRVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVSLQMKEKAIMLW
TIDGEENATK
>Mature_330_residues
MNKQEKYSFVGYWFMRYLSEYIPVIKNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTNAFLNHIETDKG
CTIQTRNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEGSVLPAVSYLDKREMDALLNTPDRQTVQGRKD
YAMLLFLYNTGVRASEAASLTIGSIIYDDASCPLVRIYGKGNKSRTCPLWNRTLNAIKPFMAGRRETERVFLNRYGNPMT
RFGIYELLERNVIKATATAPTLAKKRVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVSLQMKEKAIMLW
TIDGEENATK

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=179, Percent_Identity=34.0782122905028, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1790244, Length=241, Percent_Identity=29.045643153527, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790767, Length=176, Percent_Identity=31.25, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38059; Mature: 38059

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQEKYSFVGYWFMRYLSEYIPVIKNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
TDLTVERTNAFLNHIETDKGCTIQTRNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMK
EEEEHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
KVKVKVIEGSVLPAVSYLDKREMDALLNTPDRQTVQGRKDYAMLLFLYNTGVRASEAASL
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEEECCCCCCCCCCEE
TIGSIIYDDASCPLVRIYGKGNKSRTCPLWNRTLNAIKPFMAGRRETERVFLNRYGNPMT
EEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHH
RFGIYELLERNVIKATATAPTLAKKRVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLN
HHHHHHHHHCCHHEECCCCCHHHHHCCCCHHHHHHHEEEEEECCCCEEEEEHHHCEEEEC
TTNIYTEVSLQMKEKAIMLWTIDGEENATK
CEEEEEEEEEEEECCEEEEEEEECCCCCCC
>Mature Secondary Structure
MNKQEKYSFVGYWFMRYLSEYIPVIKNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
TDLTVERTNAFLNHIETDKGCTIQTRNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMK
EEEEHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
KVKVKVIEGSVLPAVSYLDKREMDALLNTPDRQTVQGRKDYAMLLFLYNTGVRASEAASL
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEEECCCCCCCCCCEE
TIGSIIYDDASCPLVRIYGKGNKSRTCPLWNRTLNAIKPFMAGRRETERVFLNRYGNPMT
EEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHH
RFGIYELLERNVIKATATAPTLAKKRVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLN
HHHHHHHHHCCHHEECCCCCHHHHHCCCCHHHHHHHEEEEEECCCCEEEEEHHHCEEEEC
TTNIYTEVSLQMKEKAIMLWTIDGEENATK
CEEEEEEEEEEEECCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]