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The map label for this gene is pal [C]

Identifier: 29347895

GI number: 29347895

Start: 3107147

End: 3108247

Strand: Reverse

Name: pal [C]

Synonym: BT_2485

Alternate gene names: 29347895

Gene position: 3108247-3107147 (Counterclockwise)

Preceding gene: 29347896

Following gene: 29347894

Centisome position: 49.65

GC content: 43.14

Gene sequence:

>1101_bases
ATGAGCATGAATAAAAAGAAATTGTGGATAGCAGCGTTTTCTTTGCTATTTGGCAGTATAGCCGTCTCTGCACAAGAACA
GAGAATTAAAGAAGAAGGTAAGACGGAATTCAAATCCCATTGGTTTATGCAGGTACAAGCTGGTGCTGCGCATACCGTTG
GTGAGGCCAAATTCACTGATCTTATATCTCCTGCAGTTGCATTGAATGTCGGTTATCAGTTTGCTCCCGCATGGAGTGCT
CGTGTAGGCGTTAGCGGATGGCAGGCTAAAGGTAGTTGGGTTGCTCCACGGCAGGATTATAAATATAAATATCTTCAAGG
TAATGTGGATATAGTATCTGATTTGAGTACGCTGTTTTGTGGTTTCAATCCCAAGCGTGTATTCAATGGCTATATATTTG
CCGGAGCGGGTCTTAACCGTGGCTTCGACAATGACGAAGCTGTTGCAATTAACGCAGCCGGTTACCCGATGGGCTATCTT
TGGACAGAAGGAAAGTTTCTTGTTGCCGGGCGTTTAGGTCTGGGATGCAACTTGCGCTTGAATGACCGTTTGGCTATCAA
TATAGAAGGTAATGCCAATGTTCTTTCCGACAAGTTTAATTCGAAGAAAGCGGGAAATGCCGACTGGCAGTTCAATGCTT
TGGTGGGTTTGACTATTAAATTTGGCAAAGGTTATAAAGAAATCCCGCCTGTGTATTACGAACCGGAACCGGTCGTGGTG
GAACAACCGAAACCTGCTCCTGTGGTAGAGCAGCCACAACCTAGAAAAGAGGTAGTAGTACAGCCAATGAAACAGGATAT
CTTTTTTGCCTTGAACTCGGCTAAGATACAAGACGACCAAAAGTCTAAAATCAATATGTTGGTAGAATATTTGCAGAAGA
ATCCGTCTGCCAAGGTAAAAGTGACTGGCTATGCGGATGCTAATACAGGAAATTCTAAGATCAATAAAACACTGTCCGAA
AAACGTGCAGCTAATGTTGCAGAAGTTCTGAAAACAAAAGGAATAACTCCTGATAGAATCATTGCCGATTCCAAAGGTGA
TACTGTTCAGCCCTACAAAACACCGGAAGAAAACCGGGTGAGTATCTGTATTGCTGAATAA

Upstream 100 bases:

>100_bases
CGCTGATTTGAACTAACATTAACTTGTAAATAGTTTTAGAAGGGTATCTTCATAAGAGAGGGTACCCTTCTTTAATAAAT
ATCTTATTTAAAGAAAAGAG

Downstream 100 bases:

>100_bases
ATCATGTTGCTCAACCGATACGTAAGTAACGGATGCGACTACTTTGCGGGTATCTGTCTCTGTGAAGCGATTGATAGTCG
TTTTTCCCCACTAAGGATTT

Product: major outer membrane protein OmpA

Products: NA

Alternate protein names: Omp40; PG33 [H]

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MSMNKKKLWIAAFSLLFGSIAVSAQEQRIKEEGKTEFKSHWFMQVQAGAAHTVGEAKFTDLISPAVALNVGYQFAPAWSA
RVGVSGWQAKGSWVAPRQDYKYKYLQGNVDIVSDLSTLFCGFNPKRVFNGYIFAGAGLNRGFDNDEAVAINAAGYPMGYL
WTEGKFLVAGRLGLGCNLRLNDRLAINIEGNANVLSDKFNSKKAGNADWQFNALVGLTIKFGKGYKEIPPVYYEPEPVVV
EQPKPAPVVEQPQPRKEVVVQPMKQDIFFALNSAKIQDDQKSKINMLVEYLQKNPSAKVKVTGYADANTGNSKINKTLSE
KRAANVAEVLKTKGITPDRIIADSKGDTVQPYKTPEENRVSICIAE

Sequences:

>Translated_366_residues
MSMNKKKLWIAAFSLLFGSIAVSAQEQRIKEEGKTEFKSHWFMQVQAGAAHTVGEAKFTDLISPAVALNVGYQFAPAWSA
RVGVSGWQAKGSWVAPRQDYKYKYLQGNVDIVSDLSTLFCGFNPKRVFNGYIFAGAGLNRGFDNDEAVAINAAGYPMGYL
WTEGKFLVAGRLGLGCNLRLNDRLAINIEGNANVLSDKFNSKKAGNADWQFNALVGLTIKFGKGYKEIPPVYYEPEPVVV
EQPKPAPVVEQPQPRKEVVVQPMKQDIFFALNSAKIQDDQKSKINMLVEYLQKNPSAKVKVTGYADANTGNSKINKTLSE
KRAANVAEVLKTKGITPDRIIADSKGDTVQPYKTPEENRVSICIAE
>Mature_365_residues
SMNKKKLWIAAFSLLFGSIAVSAQEQRIKEEGKTEFKSHWFMQVQAGAAHTVGEAKFTDLISPAVALNVGYQFAPAWSAR
VGVSGWQAKGSWVAPRQDYKYKYLQGNVDIVSDLSTLFCGFNPKRVFNGYIFAGAGLNRGFDNDEAVAINAAGYPMGYLW
TEGKFLVAGRLGLGCNLRLNDRLAINIEGNANVLSDKFNSKKAGNADWQFNALVGLTIKFGKGYKEIPPVYYEPEPVVVE
QPKPAPVVEQPQPRKEVVVQPMKQDIFFALNSAKIQDDQKSKINMLVEYLQKNPSAKVKVTGYADANTGNSKINKTLSEK
RAANVAEVLKTKGITPDRIIADSKGDTVQPYKTPEENRVSICIAE

Specific function: May have porin activity and function in peptidoglycan binding [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 40325; Mature: 40194

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMNKKKLWIAAFSLLFGSIAVSAQEQRIKEEGKTEFKSHWFMQVQAGAAHTVGEAKFTD
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHEEEEEEECCCCCCCCCHHHHH
LISPAVALNVGYQFAPAWSARVGVSGWQAKGSWVAPRQDYKYKYLQGNVDIVSDLSTLFC
HHCCCEEEECCCEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHC
GFNPKRVFNGYIFAGAGLNRGFDNDEAVAINAAGYPMGYLWTEGKFLVAGRLGLGCNLRL
CCCHHHHCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEEEEECCCCEEEEE
NDRLAINIEGNANVLSDKFNSKKAGNADWQFNALVGLTIKFGKGYKEIPPVYYEPEPVVV
CCEEEEEECCCCCEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCEECCCCEEE
EQPKPAPVVEQPQPRKEVVVQPMKQDIFFALNSAKIQDDQKSKINMLVEYLQKNPSAKVK
ECCCCCCCCCCCCCHHHHHHCCCHHCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEE
VTGYADANTGNSKINKTLSEKRAANVAEVLKTKGITPDRIIADSKGDTVQPYKTPEENRV
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCEE
SICIAE
EEEEEC
>Mature Secondary Structure 
SMNKKKLWIAAFSLLFGSIAVSAQEQRIKEEGKTEFKSHWFMQVQAGAAHTVGEAKFTD
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHEEEEEEECCCCCCCCCHHHHH
LISPAVALNVGYQFAPAWSARVGVSGWQAKGSWVAPRQDYKYKYLQGNVDIVSDLSTLFC
HHCCCEEEECCCEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHC
GFNPKRVFNGYIFAGAGLNRGFDNDEAVAINAAGYPMGYLWTEGKFLVAGRLGLGCNLRL
CCCHHHHCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEEEEECCCCEEEEE
NDRLAINIEGNANVLSDKFNSKKAGNADWQFNALVGLTIKFGKGYKEIPPVYYEPEPVVV
CCEEEEEECCCCCEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCEECCCCEEE
EQPKPAPVVEQPQPRKEVVVQPMKQDIFFALNSAKIQDDQKSKINMLVEYLQKNPSAKVK
ECCCCCCCCCCCCCHHHHHHCCCHHCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEE
VTGYADANTGNSKINKTLSEKRAANVAEVLKTKGITPDRIIADSKGDTVQPYKTPEENRV
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCEE
SICIAE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11457538; 12949112; 11532011 [H]