Click here to switch to the map view.

The map label for this gene is irpA [H]

Identifier: 29347889

GI number: 29347889

Start: 3101055

End: 3102173

Strand: Reverse

Name: irpA [H]

Synonym: BT_2479

Alternate gene names: 29347889

Gene position: 3102173-3101055 (Counterclockwise)

Preceding gene: 29347890

Following gene: 29347888

Centisome position: 49.55

GC content: 42.72

Gene sequence:

>1119_bases
ATGAAAAAGTTTTTTTATTTGTCGGCTCTTTCATTGGGCATGATGTGTTCCATTACGGCTTGTAGTGATGATGACACTAC
GACTATAGACGCTAAAAATCTTGACTATACGGCGGAGAATGCAAGTAGTTGGGGAAATTACATGCGAGTAGTTGCACAAT
TGTTGGTGAATGATGCTACTGCTCTTTATGATGACTGGGCGGTTAAATACAACGAAGGTGGAAGTTATGCAGATTTCTTT
AAGAATCAAGATGCTTTGACGAGTGTTGAGCAGTTGATTGACGGCTGTGTAGACATTGCCAATGAAGTAGGTACTGCCAA
AATTGGTGACCCTTACGATCTTTTCATACATAATAATGAAGAAAAGGCTTTGTATGCTGTAGAGTCATGGTATAGCTGGC
ATTCTCGTGAAGACTATCGTAACAATATCTATTCTATTCGCAATGCTTATTACGGAACACGTACAGGGGCTATTAGCGAG
TTATCTCTCTCAAAAGCAGTAGCCGCGGTAAATGCTAATCTTGATACTGAAGTAAAAAAAGCGATTGATGACGCAGCAGC
AGCAATTTGGGCTATCCCGAGTCCTTTCCGCAACAATATCAATAGTCCGGAAGCAGTAAGTGCTATGGAAGCTTGTGCCA
CTTTAGAGGGAGTACTCAAGGGTAGTTTGAAGAGTTGTATCGAAGGTATTGATAAAACAGTGTTGGCTGAAGTCGTAAAA
AATTATGTGGATGTAGTTGTATTACCTACTTACTCTGATTTGAAAGCGGGAAATCAGGCTCTTTTCGATGCTGTTGAGAC
ATTCCGTACTTCTCCCAGCAATGCTAACTTCAAGGCTTGCGCCACAGCATGGCTTGCTGCTCGTACACCGTGGGAAACCA
GTGAGGCATTCCTTTTTGGTCCGGTTGCCGACAAAGGTCTTGACCCCAATATGGATAGCTGGCCACTCGATCAGGATGGT
ATCGTACAGATCCTGACTTCCGGTAACTATTCAGACTTGAACTGGGATGGTGACTATGATGAAGAAGATGATAAAATTGC
CGGTGCACAAGCTTTGCGTGGTTACCACACTTTGGAATATTTGATCTTCAAAGATGGCGAAGCCCGTACCATTCAGTAA

Upstream 100 bases:

>100_bases
AACAATGAAAATGAATTTGCTATCGGTATAGCTTATGTCGGTTGGTTTACCAAGAGATAGTTCAAATAGGTATTTATAAT
TAATTTAATGTTTAAGTAAT

Downstream 100 bases:

>100_bases
GATTTTTACTTGTTAGAAATCAGATTTTGCGGAAACAGTGGGATAATGAATATTCTGTTGTTTCCGCAACATCTGCGTTA
AAAAGATAAATGTTAGTTAC

Product: iron-regulated protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MKKFFYLSALSLGMMCSITACSDDDTTTIDAKNLDYTAENASSWGNYMRVVAQLLVNDATALYDDWAVKYNEGGSYADFF
KNQDALTSVEQLIDGCVDIANEVGTAKIGDPYDLFIHNNEEKALYAVESWYSWHSREDYRNNIYSIRNAYYGTRTGAISE
LSLSKAVAAVNANLDTEVKKAIDDAAAAIWAIPSPFRNNINSPEAVSAMEACATLEGVLKGSLKSCIEGIDKTVLAEVVK
NYVDVVVLPTYSDLKAGNQALFDAVETFRTSPSNANFKACATAWLAARTPWETSEAFLFGPVADKGLDPNMDSWPLDQDG
IVQILTSGNYSDLNWDGDYDEEDDKIAGAQALRGYHTLEYLIFKDGEARTIQ

Sequences:

>Translated_372_residues
MKKFFYLSALSLGMMCSITACSDDDTTTIDAKNLDYTAENASSWGNYMRVVAQLLVNDATALYDDWAVKYNEGGSYADFF
KNQDALTSVEQLIDGCVDIANEVGTAKIGDPYDLFIHNNEEKALYAVESWYSWHSREDYRNNIYSIRNAYYGTRTGAISE
LSLSKAVAAVNANLDTEVKKAIDDAAAAIWAIPSPFRNNINSPEAVSAMEACATLEGVLKGSLKSCIEGIDKTVLAEVVK
NYVDVVVLPTYSDLKAGNQALFDAVETFRTSPSNANFKACATAWLAARTPWETSEAFLFGPVADKGLDPNMDSWPLDQDG
IVQILTSGNYSDLNWDGDYDEEDDKIAGAQALRGYHTLEYLIFKDGEARTIQ
>Mature_372_residues
MKKFFYLSALSLGMMCSITACSDDDTTTIDAKNLDYTAENASSWGNYMRVVAQLLVNDATALYDDWAVKYNEGGSYADFF
KNQDALTSVEQLIDGCVDIANEVGTAKIGDPYDLFIHNNEEKALYAVESWYSWHSREDYRNNIYSIRNAYYGTRTGAISE
LSLSKAVAAVNANLDTEVKKAIDDAAAAIWAIPSPFRNNINSPEAVSAMEACATLEGVLKGSLKSCIEGIDKTVLAEVVK
NYVDVVVLPTYSDLKAGNQALFDAVETFRTSPSNANFKACATAWLAARTPWETSEAFLFGPVADKGLDPNMDSWPLDQDG
IVQILTSGNYSDLNWDGDYDEEDDKIAGAQALRGYHTLEYLIFKDGEARTIQ

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: COG3487

COG function: function code P; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 40916; Mature: 40916

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFFYLSALSLGMMCSITACSDDDTTTIDAKNLDYTAENASSWGNYMRVVAQLLVNDAT
CCCEEEHHHHHHCCEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ALYDDWAVKYNEGGSYADFFKNQDALTSVEQLIDGCVDIANEVGTAKIGDPYDLFIHNNE
HHHHCCEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
EKALYAVESWYSWHSREDYRNNIYSIRNAYYGTRTGAISELSLSKAVAAVNANLDTEVKK
CCEEEEHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
AIDDAAAAIWAIPSPFRNNINSPEAVSAMEACATLEGVLKGSLKSCIEGIDKTVLAEVVK
HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NYVDVVVLPTYSDLKAGNQALFDAVETFRTSPSNANFKACATAWLAARTPWETSEAFLFG
HHHCEEEECCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEC
PVADKGLDPNMDSWPLDQDGIVQILTSGNYSDLNWDGDYDEEDDKIAGAQALRGYHTLEY
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEE
LIFKDGEARTIQ
EEEECCCCCCCC
>Mature Secondary Structure
MKKFFYLSALSLGMMCSITACSDDDTTTIDAKNLDYTAENASSWGNYMRVVAQLLVNDAT
CCCEEEHHHHHHCCEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ALYDDWAVKYNEGGSYADFFKNQDALTSVEQLIDGCVDIANEVGTAKIGDPYDLFIHNNE
HHHHCCEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
EKALYAVESWYSWHSREDYRNNIYSIRNAYYGTRTGAISELSLSKAVAAVNANLDTEVKK
CCEEEEHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
AIDDAAAAIWAIPSPFRNNINSPEAVSAMEACATLEGVLKGSLKSCIEGIDKTVLAEVVK
HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NYVDVVVLPTYSDLKAGNQALFDAVETFRTSPSNANFKACATAWLAARTPWETSEAFLFG
HHHCEEEECCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEC
PVADKGLDPNMDSWPLDQDGIVQILTSGNYSDLNWDGDYDEEDDKIAGAQALRGYHTLEY
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEE
LIFKDGEARTIQ
EEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]