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The map label for this gene is 29347873

Identifier: 29347873

GI number: 29347873

Start: 3084951

End: 3085520

Strand: Reverse

Name: 29347873

Synonym: BT_2463

Alternate gene names: NA

Gene position: 3085520-3084951 (Counterclockwise)

Preceding gene: 29347879

Following gene: 29347872

Centisome position: 49.29

GC content: 35.09

Gene sequence:

>570_bases
ATGCCTGCAAAACTCACTCGTCCAGAGAATTCTTTTAATAATATTTATATGCGATATTACAAAAAGTCTTTTCTATTTGT
AAAGTCGTATATACACAATGAGATGGTAGCCGAGGATATTGCATCTGAATCACTCATCAAACTGTGGCAATGGATACAGG
ACAACCCGGTGGAAAATATTGAACCGATGTTGCTCAGTATTTTGCGAAATAAAGCCTTAGACTACTTACGTCATGAAAGC
ATGAAACAACAGGTCATCACACGGATTAGTGAGAAACAAAATGAAGAGTTAGCTCTTCGCCTCTCCTCACTGGAAGACTG
TAATCCAAATGAAATATTCTCGAAAGAAGTTATGGATATTGTGCAAAGAACATTGCAATCATTACCTGAACAAACCTCCC
GTATATTTACTCTCAGCCGATTTGGAAATAAAACAAATCGGGAAATTGCCTGCGAATTAAATATTTCAATCAAAGATGTG
GAATATCATATATCCAAATCACTTAAGGCTCTTAGAAAAACGCTAAAAGATTACCTGCCTTTATTTTATTTCTTTTTTTA
CCATATGTAA

Upstream 100 bases:

>100_bases
TCTATTGGCTGGGATAAATAGCTAAAAAGAAAATTTGCGAATCAAATATCATTTTATATTTTTGTTTCTCAAAATTTTTA
ATGAACTAAAAAGAATTAAA

Downstream 100 bases:

>100_bases
CACCGATTACTACGCACGTTCCTTTATCTTTTGAAAAAAATATTCTTTTTCGTTTAGGGTAAACCGAAGATGAATCGTTA
TATAAATGAAAACGATAAAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor; Sigma-70 Region 2 Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-H Factor

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MPAKLTRPENSFNNIYMRYYKKSFLFVKSYIHNEMVAEDIASESLIKLWQWIQDNPVENIEPMLLSILRNKALDYLRHES
MKQQVITRISEKQNEELALRLSSLEDCNPNEIFSKEVMDIVQRTLQSLPEQTSRIFTLSRFGNKTNREIACELNISIKDV
EYHISKSLKALRKTLKDYLPLFYFFFYHM

Sequences:

>Translated_189_residues
MPAKLTRPENSFNNIYMRYYKKSFLFVKSYIHNEMVAEDIASESLIKLWQWIQDNPVENIEPMLLSILRNKALDYLRHES
MKQQVITRISEKQNEELALRLSSLEDCNPNEIFSKEVMDIVQRTLQSLPEQTSRIFTLSRFGNKTNREIACELNISIKDV
EYHISKSLKALRKTLKDYLPLFYFFFYHM
>Mature_188_residues
PAKLTRPENSFNNIYMRYYKKSFLFVKSYIHNEMVAEDIASESLIKLWQWIQDNPVENIEPMLLSILRNKALDYLRHESM
KQQVITRISEKQNEELALRLSSLEDCNPNEIFSKEVMDIVQRTLQSLPEQTSRIFTLSRFGNKTNREIACELNISIKDVE
YHISKSLKALRKTLKDYLPLFYFFFYHM

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22570; Mature: 22439

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAKLTRPENSFNNIYMRYYKKSFLFVKSYIHNEMVAEDIASESLIKLWQWIQDNPVENI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EPMLLSILRNKALDYLRHESMKQQVITRISEKQNEELALRLSSLEDCNPNEIFSKEVMDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
VQRTLQSLPEQTSRIFTLSRFGNKTNREIACELNISIKDVEYHISKSLKALRKTLKDYLP
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LFYFFFYHM
HHHHHHHCC
>Mature Secondary Structure 
PAKLTRPENSFNNIYMRYYKKSFLFVKSYIHNEMVAEDIASESLIKLWQWIQDNPVENI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EPMLLSILRNKALDYLRHESMKQQVITRISEKQNEELALRLSSLEDCNPNEIFSKEVMDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
VQRTLQSLPEQTSRIFTLSRFGNKTNREIACELNISIKDVEYHISKSLKALRKTLKDYLP
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LFYFFFYHM
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA