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The map label for this gene is ykfC [H]

Identifier: 29347707

GI number: 29347707

Start: 2871211

End: 2872869

Strand: Reverse

Name: ykfC [H]

Synonym: BT_2297

Alternate gene names: 29347707

Gene position: 2872869-2871211 (Counterclockwise)

Preceding gene: 29347708

Following gene: 29347706

Centisome position: 45.89

GC content: 43.58

Gene sequence:

>1659_bases
ATGAACGAAATTAAAACATCGTGTGCATCTACTGACCGTAAATGGAGCACTTGGGAAAGCATAGACTGGAACAAGTGTGT
GATAGCGGTTAATAAGCTACAAGCACGTATTGTAAAAGCTCAAAAGGCGGGCAAACACGGCAGGGTGAAATCCTTGCAGT
GGGTGCTGACGCATTCGTTTTACGCTAAGGCTTTAGCCGTAAAGCGTGTTACATCAAACAGTGGCAGTGACACCGCAGGC
GTTGACAAGGTGAAATGGTCAACTCCCAATGCCAGATTCAAGGCTATCGGTGAACTGAAAAGAAGAGGCTACAAGCCCCA
GCCGTTAAAAAGGGTCAATATCAAAAAGAGTAACGGGAAATTACGTCCTTTAGGTATCCCGACAATGAAAGACAGGGCTA
TGCAGGCATTATACCTGCTTGCGTTGGAACCTGTATCGGAAACAACTGCGGACAGTAATTCCTACGGTTTCCGTAAAGAG
AGAAGTACCGGAGATGCAAGGGAACAATGTTTTTGTGTCCTTGCGAAGAAAGCTTCTCCCGAATGGATTATGGAGGGTGA
CATCCAAGGTTGTTTCGACCACATCAGCCACGAATGGCTGCTGAACAATATCCCTATGGATAAAGTGATGCTGCGGAAAT
GGCTCAAATGCGGTTTCGTCTTCAACAAGGAGCTATTCCCCACGGAAGAGGGCACTCCACAGGGCGGTATCATTTCACCA
ACTCTTGCGAATATGACACTGGACGGACTGCAAACTATGCTTGCAGAGAAGTATCACAAGAAATTTGTAACCAGGAAGAC
GACGACCTACTATCCTAAAGTACATCTTGTACGCTATGCGGATGATTTTATCATCACGGGTAGAAACAAGGAAGCTTTGG
AAGAAATCAAACCGTTAGTAGTGGACTTTCTCAAAGAAAGGGGATTAACCCTGTCGGAAGAGAAAACAAAGATTACACAT
ATTGATGACGGATTTGATTTTCTTGGGTACAATATCCGAAAATACAAAGGAGTGCTTCTAATCAAACCGTCCCAAAAGAG
CCTGAAGAAATTCATGCAGAAAATCCGAGGAATCATCGATTCCAATAAAGGAAGCAAACAGGAATCACTTATAAGGCTCT
TGAATCCTGTGATAACAGGCTGGGTAAACTACTACAAGAATTGTGTGGCTTCTGACACATTCAGAAAAGCTGACTACCTG
ATATTTGAAAAGTTATGGCAATGGGCTACAAGACGACACCCCAAGAAAGGCAAATATTGGATTGCCGACCGATACTTTAC
ACGGGTAAAGAACCGTAACTGGTGCTTCGTGGCAAACTTCAAGAAAGGCAAGACTGATGACAGGATTGCTCTGAAAAGGC
TGTATGACACAAAGATTACCCGATATGTCAAGGTAAAAGGTGAAGCAAATCCCTTTGCCCCCGAATGGACAGAGTATTTT
GAAAAGCGCAAGACTTACAAGATGCTACAGTCGCTCAACGGTAGAAAATCGTTGCTGTACATGTGGGAAAGACAGAACCA
TTTATGTCCCGTATGTGGTAAACCCATAGACAAGGAACATCCTTGGGGAACTTCCCAACAAACAGTCAACGGCAAGAAAG
TAAATAATCTGCTACATGACAGTTGTAGAAGAAAAGTCATTCAAACTAATAAGATGTAA

Upstream 100 bases:

>100_bases
GGATAGAGGTTGAAACATTACCTCACACGAAAGTGGGCAGACTTCCGCATGGTGGATGTTTTACAAGAAACTTATAGAAC
TTATTAAAGGAGAAAAGCAA

Downstream 100 bases:

>100_bases
CTATGAGCTGGTTTCTATTAAATAGAAATTTAACACTGCTTGAGCCGTATGATTGGAAACTTTCACGTACGGTTCTGAGG
GGGGAAAGGGGCAGTAATGC

Product: putative reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MNEIKTSCASTDRKWSTWESIDWNKCVIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTGDAREQCFCVLAKKASPEWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMLAEKYHKKFVTRKTTTYYPKVHLVRYADDFIITGRNKEALEEIKPLVVDFLKERGLTLSEEKTKITH
IDDGFDFLGYNIRKYKGVLLIKPSQKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYL
IFEKLWQWATRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFAPEWTEYF
EKRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQTVNGKKVNNLLHDSCRRKVIQTNKM

Sequences:

>Translated_552_residues
MNEIKTSCASTDRKWSTWESIDWNKCVIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTGDAREQCFCVLAKKASPEWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMLAEKYHKKFVTRKTTTYYPKVHLVRYADDFIITGRNKEALEEIKPLVVDFLKERGLTLSEEKTKITH
IDDGFDFLGYNIRKYKGVLLIKPSQKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYL
IFEKLWQWATRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFAPEWTEYF
EKRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQTVNGKKVNNLLHDSCRRKVIQTNKM
>Mature_552_residues
MNEIKTSCASTDRKWSTWESIDWNKCVIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTGDAREQCFCVLAKKASPEWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMLAEKYHKKFVTRKTTTYYPKVHLVRYADDFIITGRNKEALEEIKPLVVDFLKERGLTLSEEKTKITH
IDDGFDFLGYNIRKYKGVLLIKPSQKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYL
IFEKLWQWATRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFAPEWTEYF
EKRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQTVNGKKVNNLLHDSCRRKVIQTNKM

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=329, Percent_Identity=25.531914893617, Blast_Score=103, Evalue=6e-23,
Organism=Saccharomyces cerevisiae, GI6226520, Length=317, Percent_Identity=29.0220820189274, Blast_Score=99, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 64066; Mature: 64066

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIKTSCASTDRKWSTWESIDWNKCVIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSF
CCCHHHHHHCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YAKALAVKRVTSNSGSDTAGVDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGK
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
LRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKERSTGDAREQCFCVLAKKASP
EEECCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
EWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
CEEEECCHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCC
TLANMTLDGLQTMLAEKYHKKFVTRKTTTYYPKVHLVRYADDFIITGRNKEALEEIKPLV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCEEEECCCHHHHHHHHHHH
VDFLKERGLTLSEEKTKITHIDDGFDFLGYNIRKYKGVLLIKPSQKSLKKFMQKIRGIID
HHHHHHCCCCCCCCCCEEEEECCCCHHHCCCHHHHCCEEEECCCHHHHHHHHHHHHHHHC
SNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLIFEKLWQWATRRHPKKGKYW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
IADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFAPEWTEYF
EHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHH
EKRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQTVNGKKVNNLLHD
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
SCRRKVIQTNKM
HHHHHHHHCCCC
>Mature Secondary Structure
MNEIKTSCASTDRKWSTWESIDWNKCVIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSF
CCCHHHHHHCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YAKALAVKRVTSNSGSDTAGVDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGK
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
LRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKERSTGDAREQCFCVLAKKASP
EEECCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
EWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
CEEEECCHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCC
TLANMTLDGLQTMLAEKYHKKFVTRKTTTYYPKVHLVRYADDFIITGRNKEALEEIKPLV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCEEEECCCHHHHHHHHHHH
VDFLKERGLTLSEEKTKITHIDDGFDFLGYNIRKYKGVLLIKPSQKSLKKFMQKIRGIID
HHHHHHCCCCCCCCCCEEEEECCCCHHHCCCHHHHCCEEEECCCHHHHHHHHHHHHHHHC
SNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLIFEKLWQWATRRHPKKGKYW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
IADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFAPEWTEYF
EHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHH
EKRKTYKMLQSLNGRKSLLYMWERQNHLCPVCGKPIDKEHPWGTSQQTVNGKKVNNLLHD
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
SCRRKVIQTNKM
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]