| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347504
Identifier: 29347504
GI number: 29347504
Start: 2625063
End: 2627117
Strand: Reverse
Name: 29347504
Synonym: BT_2094
Alternate gene names: NA
Gene position: 2627117-2625063 (Counterclockwise)
Preceding gene: 29347505
Following gene: 29347503
Centisome position: 41.96
GC content: 41.85
Gene sequence:
>2055_bases ATGAGTGGACAACAACACAGCAGCGACAATAAGAATTGGGCGGAAAAGGGAATTGTCATTCGTGAAGTGGAAATTTTAGG AAAGCGCCCGATGAAAGATATAGGCGTACAGCAGACCAGATTTGATTCACTTGTGCTTAAGGAGAATATAGCCTTGTCAA TGGCGGATATACTCACTTTCAATTCTTCTATTTTTGTAAAAAGCTACGGACGTGCCACGCTTTCTACTGTATCATTTCGG GGAACGTCTGCTTCGCATACACAGGTAACATGGAACGGTATGCGTATCAACAATCCAATGTTGGGGATGACTGACTTTTC GATGATTCCATCTTATTTTATAGATGACGCTTCTTTGCTGCATGGCACTTCATCGGTGAATATGGCTGGTGGTGGTTTGG GAGGATTGGTGAAATTATCTACAGTGCCTGCTCATCAAGAAGGCTTCGGAATGCAATATGTTCAAGGTATCGGTTCATTT AGTACCTTCGATGAGTTTCTGCAATTGAAGTATGGAGATAAACATTGGCAGATCTCGACGCGGGCGGTCTATCAGTCGTC GCCCAATGATTATAAATATCGTAATCATGATAAGAAAGAGAATATTTATGATGATAAATATAATATAATCGAACAGTATT ATCCCATAGAACGTAATCGTAGTGGTGCATACAAAGATCTGCACATTTTACAGGAGGTATATTACAATACGGGTAAAGGT GATCGCTTCGGACTGAATGCGTGGTATACTGATTCTAACCGTGAACTGGCATTACTGACGACCGATCAGGGTGATCTTAT GGATTTCGAGAACCGACAACGGGAACATACACTGCGAAGTGTTTTATCATGGGATCATACGCGTGAAAACTGGAAAGTAT CGGCAAGGGGAGGTTATGTGCATACATGGTTGGCGTACGACTATAAGCGGGATTTGGGAAATGGTATAATGGCTACAATG ACCCGTTCACGTAGTAAAGTCAATACTTTCTACGGGCAGTTGGATGGAGAGTATTTTTTCTCAGATAAACTCCTTTTGAC GGCGGGTGTGTCGGCTCATCAGCATTTGGTGAATAGTTTGGATAAAGATCTGAATAAAGATGATAATAAGAACGATAAGT ATGGTCAGGGAAGGAAGAATGATTCTATTGTTTATTTTGATAAAGGACGTATTGAGTTGTCGGGTAATGTCTCATTGAAA TGGCAGCCGGTCAATCGGTTGGGTATGTCATTGGTCCTGCGGGGAGAGATGTTCGGGACTAAATGGGCACCGGTTATTCC TGCCTTTTTTGTAGATTATGTTCTTTCTAAAAGAGGCAATATAATGGCAAAGGCTTCTATTACCCGTAATTATCGTTTTC CGACATTGAATGACCTTTATTTTTTGCCGGGTGGCAATCCGGCATTGAATAATGAAAGTGGATTTACTTACGAAACGGGG CTGTCCTTTTCTGTGGATAAGGATAATGTTTATACATTATCCGGTTCGGCTTCCTGGTTCGATCAACATATAAACGACTG GATTATTTGGCTACCTACGTCGAAGGGATTTTATTCCCCCGTTAATCTTAAAAAAGTACACGCCTATGGCGTGGAAGTAC AGGCTGATTATGCAGTTGCAATTGATAAAGCATGGAAGCTTGGATTAAATGGAACATTTGCGTGGACTCCTTCTATTAAT GAAGGTGAACCTACGAGCAAGGCTGACCAGTCAGTAGGGAAGCAGTTACCATACATACCCGAATATTCAGCTACGTTATC AGGCAGGCTGACATATCGCAGTTGGGGGCTTCTTTATAAATGGTGTTACTATAGCGAACGTTATACAATGACGAGTAATG CTGTATCCTATACGGGACATCTTCCACCCTATCTCATGAGCAACGTGACCCTTGAAAAAGGATTCTCACTCCGTTGGGCA GATTTATCCTTAAAAGGGACAGTCAATAATCTCTTTGACGAAGAGTATCTTTCGGTATTATCCCGTCCGATGCCGGGAAT TAACTTCGAGTTCTTTATCGGTATAACTCCCAAGTGGGGCAAGAAGAAAAAATAG
Upstream 100 bases:
>100_bases TCCCGGAGCATTTTGTTGGAAGTAATCGGTAGAGAAGAATATGAGGAGAAATATATTATTAGTGCAGTTTGTAGGAGTTC TTTTATTACTTCCATCTATA
Downstream 100 bases:
>100_bases GTGGGTGATAGCCGGACTCCTGTGCCATGTAGATGTATTATTGGCAGAGTATATATGAAAAAAGGATGCTTTCCGATTGT TTCTTTTAAATATAACTTTT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Vitamin; NB-Dependent Outer Membrane Receptor; Outer Membrane Receptor For Transport Of Vitamin B; Nb-Dependent Receptor; Outer Membrane Vitamin; NB-Dependent Receptor Plug; Iron Compound nB-Dependent Receptor; Outer Membrane Protein nB-Dependent Receptor; Outer Membrane Receptor Family Transporter
Number of amino acids: Translated: 684; Mature: 683
Protein sequence:
>684_residues MSGQQHSSDNKNWAEKGIVIREVEILGKRPMKDIGVQQTRFDSLVLKENIALSMADILTFNSSIFVKSYGRATLSTVSFR GTSASHTQVTWNGMRINNPMLGMTDFSMIPSYFIDDASLLHGTSSVNMAGGGLGGLVKLSTVPAHQEGFGMQYVQGIGSF STFDEFLQLKYGDKHWQISTRAVYQSSPNDYKYRNHDKKENIYDDKYNIIEQYYPIERNRSGAYKDLHILQEVYYNTGKG DRFGLNAWYTDSNRELALLTTDQGDLMDFENRQREHTLRSVLSWDHTRENWKVSARGGYVHTWLAYDYKRDLGNGIMATM TRSRSKVNTFYGQLDGEYFFSDKLLLTAGVSAHQHLVNSLDKDLNKDDNKNDKYGQGRKNDSIVYFDKGRIELSGNVSLK WQPVNRLGMSLVLRGEMFGTKWAPVIPAFFVDYVLSKRGNIMAKASITRNYRFPTLNDLYFLPGGNPALNNESGFTYETG LSFSVDKDNVYTLSGSASWFDQHINDWIIWLPTSKGFYSPVNLKKVHAYGVEVQADYAVAIDKAWKLGLNGTFAWTPSIN EGEPTSKADQSVGKQLPYIPEYSATLSGRLTYRSWGLLYKWCYYSERYTMTSNAVSYTGHLPPYLMSNVTLEKGFSLRWA DLSLKGTVNNLFDEEYLSVLSRPMPGINFEFFIGITPKWGKKKK
Sequences:
>Translated_684_residues MSGQQHSSDNKNWAEKGIVIREVEILGKRPMKDIGVQQTRFDSLVLKENIALSMADILTFNSSIFVKSYGRATLSTVSFR GTSASHTQVTWNGMRINNPMLGMTDFSMIPSYFIDDASLLHGTSSVNMAGGGLGGLVKLSTVPAHQEGFGMQYVQGIGSF STFDEFLQLKYGDKHWQISTRAVYQSSPNDYKYRNHDKKENIYDDKYNIIEQYYPIERNRSGAYKDLHILQEVYYNTGKG DRFGLNAWYTDSNRELALLTTDQGDLMDFENRQREHTLRSVLSWDHTRENWKVSARGGYVHTWLAYDYKRDLGNGIMATM TRSRSKVNTFYGQLDGEYFFSDKLLLTAGVSAHQHLVNSLDKDLNKDDNKNDKYGQGRKNDSIVYFDKGRIELSGNVSLK WQPVNRLGMSLVLRGEMFGTKWAPVIPAFFVDYVLSKRGNIMAKASITRNYRFPTLNDLYFLPGGNPALNNESGFTYETG LSFSVDKDNVYTLSGSASWFDQHINDWIIWLPTSKGFYSPVNLKKVHAYGVEVQADYAVAIDKAWKLGLNGTFAWTPSIN EGEPTSKADQSVGKQLPYIPEYSATLSGRLTYRSWGLLYKWCYYSERYTMTSNAVSYTGHLPPYLMSNVTLEKGFSLRWA DLSLKGTVNNLFDEEYLSVLSRPMPGINFEFFIGITPKWGKKKK >Mature_683_residues SGQQHSSDNKNWAEKGIVIREVEILGKRPMKDIGVQQTRFDSLVLKENIALSMADILTFNSSIFVKSYGRATLSTVSFRG TSASHTQVTWNGMRINNPMLGMTDFSMIPSYFIDDASLLHGTSSVNMAGGGLGGLVKLSTVPAHQEGFGMQYVQGIGSFS TFDEFLQLKYGDKHWQISTRAVYQSSPNDYKYRNHDKKENIYDDKYNIIEQYYPIERNRSGAYKDLHILQEVYYNTGKGD RFGLNAWYTDSNRELALLTTDQGDLMDFENRQREHTLRSVLSWDHTRENWKVSARGGYVHTWLAYDYKRDLGNGIMATMT RSRSKVNTFYGQLDGEYFFSDKLLLTAGVSAHQHLVNSLDKDLNKDDNKNDKYGQGRKNDSIVYFDKGRIELSGNVSLKW QPVNRLGMSLVLRGEMFGTKWAPVIPAFFVDYVLSKRGNIMAKASITRNYRFPTLNDLYFLPGGNPALNNESGFTYETGL SFSVDKDNVYTLSGSASWFDQHINDWIIWLPTSKGFYSPVNLKKVHAYGVEVQADYAVAIDKAWKLGLNGTFAWTPSINE GEPTSKADQSVGKQLPYIPEYSATLSGRLTYRSWGLLYKWCYYSERYTMTSNAVSYTGHLPPYLMSNVTLEKGFSLRWAD LSLKGTVNNLFDEEYLSVLSRPMPGINFEFFIGITPKWGKKKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77799; Mature: 77668
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGQQHSSDNKNWAEKGIVIREVEILGKRPMKDIGVQQTRFDSLVLKENIALSMADILTF CCCCCCCCCCCCHHHHCEEEEEEEHHCCCCHHHCCCCHHHHHHEEECCCCCEEEEHHHCC NSSIFVKSYGRATLSTVSFRGTSASHTQVTWNGMRINNPMLGMTDFSMIPSYFIDDASLL CCEEEEEECCCEEEEEEEECCCCCCCCEEEECCEEECCCCCCCCHHHHCCHHHCCCHHHH HGTSSVNMAGGGLGGLVKLSTVPAHQEGFGMQYVQGIGSFSTFDEFLQLKYGDKHWQIST CCCCCCEECCCCCCCEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHEEECCCEEEEEE RAVYQSSPNDYKYRNHDKKENIYDDKYNIIEQYYPIERNRSGAYKDLHILQEVYYNTGKG EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC DRFGLNAWYTDSNRELALLTTDQGDLMDFENRQREHTLRSVLSWDHTRENWKVSARGGYV CEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEE HTWLAYDYKRDLGNGIMATMTRSRSKVNTFYGQLDGEYFFSDKLLLTAGVSAHQHLVNSL EEEEEEHHHHHHCCCEEEEHHHCHHHHHHHHHCCCCCEEECCCEEEEECCHHHHHHHHHH DKDLNKDDNKNDKYGQGRKNDSIVYFDKGRIELSGNVSLKWQPVNRLGMSLVLRGEMFGT HHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCEEEEEECHHHCCEEEEEECCCCCC KWAPVIPAFFVDYVLSKRGNIMAKASITRNYRFPTLNDLYFLPGGNPALNNESGFTYETG CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCEEEECC LSFSVDKDNVYTLSGSASWFDQHINDWIIWLPTSKGFYSPVNLKKVHAYGVEVQADYAVA CEEEECCCCEEEECCCCHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECEEEE IDKAWKLGLNGTFAWTPSINEGEPTSKADQSVGKQLPYIPEYSATLSGRLTYRSWGLLYK EECCEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEE WCYYSERYTMTSNAVSYTGHLPPYLMSNVTLEKGFSLRWADLSLKGTVNNLFDEEYLSVL EEEECCCEEEECCCEEECCCCCHHHHCCCEECCCCEEEEEEEEECCCHHHHHHHHHHHHH SRPMPGINFEFFIGITPKWGKKKK HCCCCCCCEEEEEEECCCCCCCCC >Mature Secondary Structure SGQQHSSDNKNWAEKGIVIREVEILGKRPMKDIGVQQTRFDSLVLKENIALSMADILTF CCCCCCCCCCCHHHHCEEEEEEEHHCCCCHHHCCCCHHHHHHEEECCCCCEEEEHHHCC NSSIFVKSYGRATLSTVSFRGTSASHTQVTWNGMRINNPMLGMTDFSMIPSYFIDDASLL CCEEEEEECCCEEEEEEEECCCCCCCCEEEECCEEECCCCCCCCHHHHCCHHHCCCHHHH HGTSSVNMAGGGLGGLVKLSTVPAHQEGFGMQYVQGIGSFSTFDEFLQLKYGDKHWQIST CCCCCCEECCCCCCCEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHEEECCCEEEEEE RAVYQSSPNDYKYRNHDKKENIYDDKYNIIEQYYPIERNRSGAYKDLHILQEVYYNTGKG EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC DRFGLNAWYTDSNRELALLTTDQGDLMDFENRQREHTLRSVLSWDHTRENWKVSARGGYV CEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEE HTWLAYDYKRDLGNGIMATMTRSRSKVNTFYGQLDGEYFFSDKLLLTAGVSAHQHLVNSL EEEEEEHHHHHHCCCEEEEHHHCHHHHHHHHHCCCCCEEECCCEEEEECCHHHHHHHHHH DKDLNKDDNKNDKYGQGRKNDSIVYFDKGRIELSGNVSLKWQPVNRLGMSLVLRGEMFGT HHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCEEEEEECHHHCCEEEEEECCCCCC KWAPVIPAFFVDYVLSKRGNIMAKASITRNYRFPTLNDLYFLPGGNPALNNESGFTYETG CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCEEEECC LSFSVDKDNVYTLSGSASWFDQHINDWIIWLPTSKGFYSPVNLKKVHAYGVEVQADYAVA CEEEECCCCEEEECCCCHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECEEEE IDKAWKLGLNGTFAWTPSINEGEPTSKADQSVGKQLPYIPEYSATLSGRLTYRSWGLLYK EECCEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEE WCYYSERYTMTSNAVSYTGHLPPYLMSNVTLEKGFSLRWADLSLKGTVNNLFDEEYLSVL EEEECCCEEEECCCEEECCCCCHHHHCCCEECCCCEEEEEEEEECCCHHHHHHHHHHHHH SRPMPGINFEFFIGITPKWGKKKK HCCCCCCCEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA