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The map label for this gene is yabD [H]

Identifier: 29347466

GI number: 29347466

Start: 2575720

End: 2576496

Strand: Reverse

Name: yabD [H]

Synonym: BT_2056

Alternate gene names: 29347466

Gene position: 2576496-2575720 (Counterclockwise)

Preceding gene: 29347467

Following gene: 29347465

Centisome position: 41.16

GC content: 46.59

Gene sequence:

>777_bases
ATGTTAATAGATACTCATTCCCATCTTTTTTTAGAAGAATTTTCCGATGACCTGCCGCAGGTGATGGAACGTGCACGTCA
GGCAGGTGTTTCGCGTATTTATATGCCCAACATTGACAGTACGACGATTGAACCCATGCTGTCGGTTTGCGCGGATTATC
CGGATTTCTGTTATCCGATGATCGGACTGCATCCTACCTCGGTGAACGAGTCATACCGTCAGGAACTGTCAATCGTCCGG
GAGCGTCTGGAAGCACCCAATAACTTTGTAGCCATTGGCGAAATTGGGCTTGATTTGTATTGGGATAAAACCTTTCTGAA
CGAACAACTGTACGTTTTTGAGAAACAGATAGAATGGGCGCTCGAATATAAATTGCCCATCGTGGTTCATTCGCGGGAGG
CATTCGACTATATATATAAGGTAATGGAGCCCTATAAAAACACTGCTTTGACCGGTATTTTTCATAGTTTCACCGGAAAT
GCCGAAGAAGCGGCCCGGTTGCTTGAATTTGGCGGTTTCATGTTGGGAATCAATGGAGTGGTCACATTTAAAAAGTCCTC
ACTGCCGGATACTTTGCTGACAGTGCCTTTGGAGCGGATTGTGCTCGAAACGGATTCACCGTATCTGACCCCGGCCCCCA
ATCGGGGGAAGAGGAATGAAAGTGCGAATGTGCGTGATACGTTCCTGAAACTGGTAGAAATTTATCGGACCACCCCGGAG
CACCTTTCACAAGCCACTTCCGAAAATGCGCTAAAAGTGTTCGGAATGGTCAAATAA

Upstream 100 bases:

>100_bases
AAGTGAACCCCAATGAAGCCCGGTTGGAAAAATGTCGTGACTATGGGCTGGTATATTACTACCGCTCCAACGAAAAAGTA
AAAGAAGAAAGCGAATTGTC

Downstream 100 bases:

>100_bases
GGTTCCAAAGGTTTTAAATTATATTAATTTGCAGTATTTATTTAAGATAAAAAAGGGATAATGCTTTAGGAAAAGAAAAA
AAAGGATACATTTGTAGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLIDTHSHLFLEEFSDDLPQVMERARQAGVSRIYMPNIDSTTIEPMLSVCADYPDFCYPMIGLHPTSVNESYRQELSIVR
ERLEAPNNFVAIGEIGLDLYWDKTFLNEQLYVFEKQIEWALEYKLPIVVHSREAFDYIYKVMEPYKNTALTGIFHSFTGN
AEEAARLLEFGGFMLGINGVVTFKKSSLPDTLLTVPLERIVLETDSPYLTPAPNRGKRNESANVRDTFLKLVEIYRTTPE
HLSQATSENALKVFGMVK

Sequences:

>Translated_258_residues
MLIDTHSHLFLEEFSDDLPQVMERARQAGVSRIYMPNIDSTTIEPMLSVCADYPDFCYPMIGLHPTSVNESYRQELSIVR
ERLEAPNNFVAIGEIGLDLYWDKTFLNEQLYVFEKQIEWALEYKLPIVVHSREAFDYIYKVMEPYKNTALTGIFHSFTGN
AEEAARLLEFGGFMLGINGVVTFKKSSLPDTLLTVPLERIVLETDSPYLTPAPNRGKRNESANVRDTFLKLVEIYRTTPE
HLSQATSENALKVFGMVK
>Mature_258_residues
MLIDTHSHLFLEEFSDDLPQVMERARQAGVSRIYMPNIDSTTIEPMLSVCADYPDFCYPMIGLHPTSVNESYRQELSIVR
ERLEAPNNFVAIGEIGLDLYWDKTFLNEQLYVFEKQIEWALEYKLPIVVHSREAFDYIYKVMEPYKNTALTGIFHSFTGN
AEEAARLLEFGGFMLGINGVVTFKKSSLPDTLLTVPLERIVLETDSPYLTPAPNRGKRNESANVRDTFLKLVEIYRTTPE
HLSQATSENALKVFGMVK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=274, Percent_Identity=27.007299270073, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=28.9473684210526, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=29.2134831460674, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=28.0442804428044, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI226061614, Length=254, Percent_Identity=27.9527559055118, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI225903439, Length=227, Percent_Identity=28.1938325991189, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI225903424, Length=161, Percent_Identity=34.1614906832298, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=28.5087719298246, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=30.078125, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=31.9066147859922, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI48994985, Length=265, Percent_Identity=26.7924528301887, Blast_Score=94, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=286, Percent_Identity=29.020979020979, Blast_Score=117, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=28.5171102661597, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24586117, Length=212, Percent_Identity=34.4339622641509, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI221330018, Length=212, Percent_Identity=34.4339622641509, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24648690, Length=285, Percent_Identity=26.3157894736842, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29516; Mature: 29516

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDTHSHLFLEEFSDDLPQVMERARQAGVSRIYMPNIDSTTIEPMLSVCADYPDFCYPM
CEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHHH
IGLHPTSVNESYRQELSIVRERLEAPNNFVAIGEIGLDLYWDKTFLNEQLYVFEKQIEWA
HCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECEEEEECHHHHCCHHHHHHHHHHHH
LEYKLPIVVHSREAFDYIYKVMEPYKNTALTGIFHSFTGNAEEAARLLEFGGFMLGINGV
HEEECEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCEE
VTFKKSSLPDTLLTVPLERIVLETDSPYLTPAPNRGKRNESANVRDTFLKLVEIYRTTPE
EEEECCCCCHHHHHHHHHHHEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCHH
HLSQATSENALKVFGMVK
HHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MLIDTHSHLFLEEFSDDLPQVMERARQAGVSRIYMPNIDSTTIEPMLSVCADYPDFCYPM
CEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHHH
IGLHPTSVNESYRQELSIVRERLEAPNNFVAIGEIGLDLYWDKTFLNEQLYVFEKQIEWA
HCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECEEEEECHHHHCCHHHHHHHHHHHH
LEYKLPIVVHSREAFDYIYKVMEPYKNTALTGIFHSFTGNAEEAARLLEFGGFMLGINGV
HEEECEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCEE
VTFKKSSLPDTLLTVPLERIVLETDSPYLTPAPNRGKRNESANVRDTFLKLVEIYRTTPE
EEEECCCCCHHHHHHHHHHHEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCHH
HLSQATSENALKVFGMVK
HHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]