| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is cbg-1 [H]
Identifier: 29347188
GI number: 29347188
Start: 2217682
End: 2220243
Strand: Reverse
Name: cbg-1 [H]
Synonym: BT_1778
Alternate gene names: 29347188
Gene position: 2220243-2217682 (Counterclockwise)
Preceding gene: 29347189
Following gene: 29347187
Centisome position: 35.47
GC content: 47.93
Gene sequence:
>2562_bases ATGATCATGATGAAAAGGTATAAAAAGATTTTGTTGACAGGTGTGTTGTCAGCCTTGTCTTGTTCATTCGTTCACGCACA GGAGCTATACAAGAATGAAAATGCGCCTGTGCATGAACGGGTAATGGATTTGATTTCCCGTTTGACGGTGGAAGAGAAGA TCAGTTTGCTTCGTGCCACTTCTCCCGGCATTCCCCGTTTGGGTATCGATAAATACTATCATGGCAATGAAGCATTGCAT GGAGTAGTACGTCCCGGACGTTTCACCGTATTTCCACAAGCCATTGGACTGGCAGCAACCTGGAATCCGGAGTTGCAGAA AAGGGTAGCCACAGTGATCTCGGATGAGGCGCGTGCCCGTTGGAACGAGCTGGATCAGGGAAGAGAACAGAAAGAACAAT TCAGCGATGTGCTGACTTTCTGGTCGCCTACCGTGAACATGGCACGCGACCCGCGTTGGGGACGAACACCGGAAACGTAT GGAGAAGACCCTTTCCTGAGTGGAATAATGGGAACAGCCTTTGTGAACGGACTGCAAGGAGATGATCCGCATTACCTGAA AATCGTTTCTACTCCCAAGCATTTTGCCGCCAACAACGAAGAGCATAATCGCTTTGTCTGCAACCCGCAGATATCGGAGA AACAACTGCGTGAATATTATTTTCCTGCTTTCGAAATGTGTGTGAAGGAAGGAAAAGCCGCTTCCATCATGTCCGCCTAT AATGCGCTGAATGATGTGCCCTGCACGCTGAATCCGTGGCTGCTGCAAAAGGTGTTGCGTCAGGACTGGGGATTTCAGGG ATATGTCGTTTCCGATTGTGGCGGACCTGCCTTGCTGGTCAATGCCCATAAATATGTAAAGACGAAGGAGGCGGCTGCCA CTTTATCCATCAAGGCGGGACTCGACCTTGAATGCGGTGACGATGTGTATGACGGCCCCTTATTGAATGCTTACAAACAA TATATGGTATCGGATGCCGATATTGACTCCGCCGCCTATCATGTGCTGACGGCCCGCATGAAACTGGGACTTTTTGATAG CGGGGAACGAAATCCGTATACTAAAATCTCTCCGTCAGTGATCGGTTCGAAAGAACATCAGCAGATAGCTCTGGACGCTG CCCGCCAATGTGTCGTTTTACTGAAGAATCAGAAAAATAGGCTTCCGCTGAATGCTGACAAACTGAAATCAATCGCAGTA GTCGGCATCAATGCCGGCAAATGTGAGTTTGGCGATTACAGCGGCGCTCCGGTAGTAGAACCGGTTTCCATACTACAAGG TATCAGAAACAGGGTAGGCGATCGGGTGAAAGTCGTCTATGCTCCCTGGAAATCTGCTGCCGATGGGCTGGAACTTATTC AGGGAGAGAACTTCCCGGAAGGACTGCAAGCTGAATATTTTGACAATACCCGCCTCGAAGGCACCCCGAGAGTGCGTAAG GAGAGTTGGATCAACTTTGAACCTGCCAATCAGGCTCCCGATCCGTTCCTGCCTAAATCTCCGTTGTCTGTCCGTTGGAC GGGAAAGTTGAAACCGACCGTTTCCGGTCGCTATACTTTCAGCTTTACATCCGATGACGGTTGCCGCCTGAGCATTAATA ATCAGATGCTGATTGATGCATGGCAGGCACATGCCGTATCTACGGATTCCGCTTCCATTTATCTCGAAGCGGGAAAAGAA TACCAGTTGAAAGCGGAATATTATGACAACCGGGATTATGCCATTGCAAAGTTGCAATGGAAAGTTCCGCAGATAGGCAA GGCAACTCGTCTCGATTTGTACGGAGAAGCCGGGAAAGCGGTTCGCGAATGTGAAACGGTAGTTGCTGTGATGGGTATCA ATAAATCGATAGAGCGTGAAGGACAGGACCGGTATGATATTCAGCTTCCGGCGGATCAGAGAGAGTTTCTGCAGGAAATC TATAAAGTGAATCCCAACATAATTGTTGTTTTGGTAGCAGGCAGTTCATTGGCTATTAACTGGATGGACGAGCATATTCC TGCCATTGTGAATGCCTGGTATCCGGGTGAACAGGGAGGAACCGCCGTTGCCGAAGTATTGTTCGGTGATTATAATCCTG CCGGACGTCTGCCGCTCACCTACTACAAGTCTTTGGATGAACTGCCTCCGTTTGATGATTATGATATAACCAAAGGGCGT ACTTATAAATATTTCAAAGGAGATGTCCTTTATCCGTTCGGCTATGGTCTGAGTTACTCTTCTTTTACATACAGCGATCT GCAAGTAAAAGACGGGGGCGGTGAAGTCACCGTTTCATTCCGGTTAAAAAATACCGGTAAGAGAAATGGCGATGAGGTTG CTCAGGTTTATGTGCGGATACCGGAGACCGGAGGAATTGTTCCTTTGAAAGAATTGAAGGGATTCCGTCGTGTTCCTTTG AAATCGGGAGAAAGCCGTCGGGTAGAGATTAAGTTGGACAAAGAGCAACTTCGCTATTGGGATGTAGAAAAAGGACAGTT TGTAGTACCGAAAGGGGCATTTGACGTTATGGTTGGTGCTTCTTCCAAAGATATTCGTCTGCAAACAGTCATTGATTTAT AG
Upstream 100 bases:
>100_bases AGAAAGGCTTGCCGGCATCTCCTTTCCGCACGGACAGCTGGGATAAATGATGGGGGAGAGTACGGGGCTTACCATGTTTG TTATTAAATAAGGTAGAAAA
Downstream 100 bases:
>100_bases ACTTTATTTAAATTTGAACCAGAAAGAAGATTAAGATTACATTCACTGAGGTAATGCCTTCTGATTGCACAGTCTGTGTC ACCCTATTGGCACAGTTGTG
Product: beta-glucosidase
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MIMMKRYKKILLTGVLSALSCSFVHAQELYKNENAPVHERVMDLISRLTVEEKISLLRATSPGIPRLGIDKYYHGNEALH GVVRPGRFTVFPQAIGLAATWNPELQKRVATVISDEARARWNELDQGREQKEQFSDVLTFWSPTVNMARDPRWGRTPETY GEDPFLSGIMGTAFVNGLQGDDPHYLKIVSTPKHFAANNEEHNRFVCNPQISEKQLREYYFPAFEMCVKEGKAASIMSAY NALNDVPCTLNPWLLQKVLRQDWGFQGYVVSDCGGPALLVNAHKYVKTKEAAATLSIKAGLDLECGDDVYDGPLLNAYKQ YMVSDADIDSAAYHVLTARMKLGLFDSGERNPYTKISPSVIGSKEHQQIALDAARQCVVLLKNQKNRLPLNADKLKSIAV VGINAGKCEFGDYSGAPVVEPVSILQGIRNRVGDRVKVVYAPWKSAADGLELIQGENFPEGLQAEYFDNTRLEGTPRVRK ESWINFEPANQAPDPFLPKSPLSVRWTGKLKPTVSGRYTFSFTSDDGCRLSINNQMLIDAWQAHAVSTDSASIYLEAGKE YQLKAEYYDNRDYAIAKLQWKVPQIGKATRLDLYGEAGKAVRECETVVAVMGINKSIEREGQDRYDIQLPADQREFLQEI YKVNPNIIVVLVAGSSLAINWMDEHIPAIVNAWYPGEQGGTAVAEVLFGDYNPAGRLPLTYYKSLDELPPFDDYDITKGR TYKYFKGDVLYPFGYGLSYSSFTYSDLQVKDGGGEVTVSFRLKNTGKRNGDEVAQVYVRIPETGGIVPLKELKGFRRVPL KSGESRRVEIKLDKEQLRYWDVEKGQFVVPKGAFDVMVGASSKDIRLQTVIDL
Sequences:
>Translated_853_residues MIMMKRYKKILLTGVLSALSCSFVHAQELYKNENAPVHERVMDLISRLTVEEKISLLRATSPGIPRLGIDKYYHGNEALH GVVRPGRFTVFPQAIGLAATWNPELQKRVATVISDEARARWNELDQGREQKEQFSDVLTFWSPTVNMARDPRWGRTPETY GEDPFLSGIMGTAFVNGLQGDDPHYLKIVSTPKHFAANNEEHNRFVCNPQISEKQLREYYFPAFEMCVKEGKAASIMSAY NALNDVPCTLNPWLLQKVLRQDWGFQGYVVSDCGGPALLVNAHKYVKTKEAAATLSIKAGLDLECGDDVYDGPLLNAYKQ YMVSDADIDSAAYHVLTARMKLGLFDSGERNPYTKISPSVIGSKEHQQIALDAARQCVVLLKNQKNRLPLNADKLKSIAV VGINAGKCEFGDYSGAPVVEPVSILQGIRNRVGDRVKVVYAPWKSAADGLELIQGENFPEGLQAEYFDNTRLEGTPRVRK ESWINFEPANQAPDPFLPKSPLSVRWTGKLKPTVSGRYTFSFTSDDGCRLSINNQMLIDAWQAHAVSTDSASIYLEAGKE YQLKAEYYDNRDYAIAKLQWKVPQIGKATRLDLYGEAGKAVRECETVVAVMGINKSIEREGQDRYDIQLPADQREFLQEI YKVNPNIIVVLVAGSSLAINWMDEHIPAIVNAWYPGEQGGTAVAEVLFGDYNPAGRLPLTYYKSLDELPPFDDYDITKGR TYKYFKGDVLYPFGYGLSYSSFTYSDLQVKDGGGEVTVSFRLKNTGKRNGDEVAQVYVRIPETGGIVPLKELKGFRRVPL KSGESRRVEIKLDKEQLRYWDVEKGQFVVPKGAFDVMVGASSKDIRLQTVIDL >Mature_853_residues MIMMKRYKKILLTGVLSALSCSFVHAQELYKNENAPVHERVMDLISRLTVEEKISLLRATSPGIPRLGIDKYYHGNEALH GVVRPGRFTVFPQAIGLAATWNPELQKRVATVISDEARARWNELDQGREQKEQFSDVLTFWSPTVNMARDPRWGRTPETY GEDPFLSGIMGTAFVNGLQGDDPHYLKIVSTPKHFAANNEEHNRFVCNPQISEKQLREYYFPAFEMCVKEGKAASIMSAY NALNDVPCTLNPWLLQKVLRQDWGFQGYVVSDCGGPALLVNAHKYVKTKEAAATLSIKAGLDLECGDDVYDGPLLNAYKQ YMVSDADIDSAAYHVLTARMKLGLFDSGERNPYTKISPSVIGSKEHQQIALDAARQCVVLLKNQKNRLPLNADKLKSIAV VGINAGKCEFGDYSGAPVVEPVSILQGIRNRVGDRVKVVYAPWKSAADGLELIQGENFPEGLQAEYFDNTRLEGTPRVRK ESWINFEPANQAPDPFLPKSPLSVRWTGKLKPTVSGRYTFSFTSDDGCRLSINNQMLIDAWQAHAVSTDSASIYLEAGKE YQLKAEYYDNRDYAIAKLQWKVPQIGKATRLDLYGEAGKAVRECETVVAVMGINKSIEREGQDRYDIQLPADQREFLQEI YKVNPNIIVVLVAGSSLAINWMDEHIPAIVNAWYPGEQGGTAVAEVLFGDYNPAGRLPLTYYKSLDELPPFDDYDITKGR TYKYFKGDVLYPFGYGLSYSSFTYSDLQVKDGGGEVTVSFRLKNTGKRNGDEVAQVYVRIPETGGIVPLKELKGFRRVPL KSGESRRVEIKLDKEQLRYWDVEKGQFVVPKGAFDVMVGASSKDIRLQTVIDL
Specific function: Involved in modifying a vir-inducing plant signal molecule. Hydrolyzes coniferin but not cellobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=485, Percent_Identity=31.340206185567, Blast_Score=199, Evalue=6e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 - InterPro: IPR011658 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 95549; Mature: 95549
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMMKRYKKILLTGVLSALSCSFVHAQELYKNENAPVHERVMDLISRLTVEEKISLLRAT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC SPGIPRLGIDKYYHGNEALHGVVRPGRFTVFPQAIGLAATWNPELQKRVATVISDEARAR CCCCCCCCCCCEECCCHHHHEEECCCEEEECHHHHCEEEECCHHHHHHHHHHHHHHHHHH WNELDQGREQKEQFSDVLTFWSPTVNMARDPRWGRTPETYGEDPFLSGIMGTAFVNGLQG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC DDPHYLKIVSTPKHFAANNEEHNRFVCNPQISEKQLREYYFPAFEMCVKEGKAASIMSAY CCCCEEEEEECCHHHCCCCCCCCEEEECCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHH NALNDVPCTLNPWLLQKVLRQDWGFQGYVVSDCGGPALLVNAHKYVKTKEAAATLSIKAG HHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEECHHHHHHHHHHEEEEEECC LDLECGDDVYDGPLLNAYKQYMVSDADIDSAAYHVLTARMKLGLFDSGERNPYTKISPSV CCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH IGSKEHQQIALDAARQCVVLLKNQKNRLPLNADKLKSIAVVGINAGKCEFGDYSGAPVVE CCCCCHHHHHHHHHHHEEEEEECCCCCCCCCHHHCCEEEEEECCCCCCCCCCCCCCCCCC PVSILQGIRNRVGDRVKVVYAPWKSAADGLELIQGENFPEGLQAEYFDNTRLEGTPRVRK HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCH ESWINFEPANQAPDPFLPKSPLSVRWTGKLKPTVSGRYTFSFTSDDGCRLSINNQMLIDA HCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCEEEEE WQAHAVSTDSASIYLEAGKEYQLKAEYYDNRDYAIAKLQWKVPQIGKATRLDLYGEAGKA HHHHEECCCCCEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCHHH VRECETVVAVMGINKSIEREGQDRYDIQLPADQREFLQEIYKVNPNIIVVLVAGSSLAIN HHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCEEEE WMDEHIPAIVNAWYPGEQGGTAVAEVLFGDYNPAGRLPLTYYKSLDELPPFDDYDITKGR EHHHHCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC TYKYFKGDVLYPFGYGLSYSSFTYSDLQVKDGGGEVTVSFRLKNTGKRNGDEVAQVYVRI EEEEEECCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCHHCEEEEEEEE PETGGIVPLKELKGFRRVPLKSGESRRVEIKLDKEQLRYWDVEKGQFVVPKGAFDVMVGA CCCCCEEEHHHHCCCCCCCCCCCCCEEEEEEECHHHHHEEECCCCCEEECCCCEEEEEEC SSKDIRLQTVIDL CCCCEEEEEEECC >Mature Secondary Structure MIMMKRYKKILLTGVLSALSCSFVHAQELYKNENAPVHERVMDLISRLTVEEKISLLRAT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC SPGIPRLGIDKYYHGNEALHGVVRPGRFTVFPQAIGLAATWNPELQKRVATVISDEARAR CCCCCCCCCCCEECCCHHHHEEECCCEEEECHHHHCEEEECCHHHHHHHHHHHHHHHHHH WNELDQGREQKEQFSDVLTFWSPTVNMARDPRWGRTPETYGEDPFLSGIMGTAFVNGLQG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC DDPHYLKIVSTPKHFAANNEEHNRFVCNPQISEKQLREYYFPAFEMCVKEGKAASIMSAY CCCCEEEEEECCHHHCCCCCCCCEEEECCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHH NALNDVPCTLNPWLLQKVLRQDWGFQGYVVSDCGGPALLVNAHKYVKTKEAAATLSIKAG HHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEECHHHHHHHHHHEEEEEECC LDLECGDDVYDGPLLNAYKQYMVSDADIDSAAYHVLTARMKLGLFDSGERNPYTKISPSV CCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH IGSKEHQQIALDAARQCVVLLKNQKNRLPLNADKLKSIAVVGINAGKCEFGDYSGAPVVE CCCCCHHHHHHHHHHHEEEEEECCCCCCCCCHHHCCEEEEEECCCCCCCCCCCCCCCCCC PVSILQGIRNRVGDRVKVVYAPWKSAADGLELIQGENFPEGLQAEYFDNTRLEGTPRVRK HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCH ESWINFEPANQAPDPFLPKSPLSVRWTGKLKPTVSGRYTFSFTSDDGCRLSINNQMLIDA HCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCEEEEE WQAHAVSTDSASIYLEAGKEYQLKAEYYDNRDYAIAKLQWKVPQIGKATRLDLYGEAGKA HHHHEECCCCCEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCHHH VRECETVVAVMGINKSIEREGQDRYDIQLPADQREFLQEIYKVNPNIIVVLVAGSSLAIN HHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCEEEE WMDEHIPAIVNAWYPGEQGGTAVAEVLFGDYNPAGRLPLTYYKSLDELPPFDDYDITKGR EHHHHCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC TYKYFKGDVLYPFGYGLSYSSFTYSDLQVKDGGGEVTVSFRLKNTGKRNGDEVAQVYVRI EEEEEECCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCHHCEEEEEEEE PETGGIVPLKELKGFRRVPLKSGESRRVEIKLDKEQLRYWDVEKGQFVVPKGAFDVMVGA CCCCCEEEHHHHCCCCCCCCCCCCCEEEEEEECHHHHHEEECCCCCEEECCCCEEEEEEC SSKDIRLQTVIDL CCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537792 [H]