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The map label for this gene is kpsD [H]

Identifier: 29347133

GI number: 29347133

Start: 2120845

End: 2123214

Strand: Reverse

Name: kpsD [H]

Synonym: BT_1723

Alternate gene names: 29347133

Gene position: 2123214-2120845 (Counterclockwise)

Preceding gene: 29347134

Following gene: 29347132

Centisome position: 33.92

GC content: 46.41

Gene sequence:

>2370_bases
ATGCTGGGAAGTGGCTCGCTTATGGCTCAGTCCATGAGTGACTCACAGGTACTGGAATATGTAAAAGACGGCATCCGCCA
AGGCAAGGAACAGAAGCAGCTTGCTTCCGAACTAGCCCGTAAGGGTGTAACCAAAGAACAGGCAATGCGTGTGAAGCAGC
TATACGAGCAGCAGAACAATGTAAATACCTCGAAATCAACGGGCACGGACATCAACGAATCCCGCCTGCGTGAAGAGACT
AAGAAGAATACTTCCGATATGCTGGAGGATCATCCGACTACTCAGGACCTTGCCCGTGGTGATCAGGTCTTCGGACGTAA
CATCTTCAATACCCGCAACCTGACGTTCGAGCCTAGTGTCAACCTTGCCACTCCTGCCAATTACCGTCTTGGTCCCGGTG
ATGAAGTCATCATTGATATCTGGGGTGCGAGCCAGAACACGATCCGCCAGCAAATCTCTCCTGAAGGTACTATCAACATT
CAGAAGATCGGCCCTGTCAACCTTAGCGGTATGACAGTCTCTGCCGCCAATGACTATCTGAAGAACGCCCTGAATAAAAT
ATATAACGGTCTGAACAACACGACCGATCCAACTTCCGACATCCGTCTGACGTTAGGTAATATCCGTACTATTCAGATTA
ATGTGATGGGAGAAGTCGTACAGCCCGGTACCTACGCCCTTTCTTCCTTCTCTACCGTCTTCCATGCGCTTTATCGTGCA
GGCGGTGTGAGTGATATCGGTAGCCTCCGAAACGTTCAGTTGGTACGCAACGGAAAGAATATTGCCACCATCGACGTCTA
CGAATTTATCATGAAAGGCAACACACAGGATGACATCCGCCTTCAGGAAGGTGACGTCGTGATTGTTCCCGCTTATGATG
TATTGGTAAAGATCAGCGGCAAGGTAAAACGTCCTATGCGTTTTGAAATGAAGAAAGAAGAGAACCTTGCCACTTTAATC
AAATATGCCGGCGGCTTTGAAGCCGATGCCTACACCCGTTCATTACGTGTTGTCCGTCAGAATGGTGAGGAATACGAAGT
CAACACAGTCAAAGATATAGATTACAACATTTATAAAATGCGTAACGGTGACGTAGTAACCGCCGAAGCCATCCTTAACC
GCTTCACAAACAAACTGGAAATCCGTGGCGCTGTCTATCGTCCCGGTATCTACCAGCTCAGCGGTAAACTGAACACGATC
CGCGAACTTGTCCATGAAGCTCAGGGTCTGACCGGTGACGCTTTCCTGAATCGTGCCGTCCTCTATCGCCAGCGTGAAGA
CCTGACCAGTGAAGTTGTTCAGATAGACATTAAGTCTATCATGGACGGCACTTCCCCAAACCTTGCCCTAATGAAGAATG
ACATCCTCTACATTCCAAGTATCCATGACCTGGAAGACCGGGGTAATGTCACAGTTCACGGTGAGGTTGCCCACCCTGAT
TCCTATCCTTATGCGGATAACATGACACTTGAGGATCTGATCATTCAGGCCGGTGGCTTGAAAGAAGCCGCCTCTACTGT
CCGTATTGATATATCGAGACGAATCAAGAATCCTCGTAGTACTGCGGATAATGATACGATTGGTCAGATGTATACCTTCT
CTTTAAAGGATGGTTTTGTAATAGATGGTCAGCCCGGTTTTATCCTTGAGCCTTATGATCAGGTTTATGTCCGTCGCAGT
CCGGGCTATCAGGCACAACAGAATGTAGCCATTGAAGGTGAAATCCTTTTCGGAGGAAATTACGCCATGACCAGCCGTGA
GGAACGTCTTTCCGATTTAGTGAATAAAGCCGGTGGTCCGACCAATTATGCCTATCTGCGTGGTGCGAAACTGACCCGTG
TGGCTAACGCTAGTGAAAAGAAACGTATGGGTGATGTAATTCGCCTTATGAGCAGGCAATTGGGCGAAGCCATGATTGAC
TCTTTGGGTATTCGTGTTGAAGATACTTTTACGGTTGGAATAGATTTGGAAAAAGCCTTGAGCAATCCTAAAAGTAATGC
CGATCTTGTCTTACGTGAAGGTGATGTGATCTCCATACCTAAGAATACTAATACTGTAACTATCAATGGTGCTGTCATGG
TTCCGAATACGGTTTCTTATATGAAGGGAAAGAATGTGGATTATTACCTGAATCAGGCCGGTGGCTGTTCTGATAATGCA
AGGAAGAGTAAGAAGTTCATTGTTTACATGAATGGTCAGGTGACGAAGGTTAAGGGTAGTGGTAAGAAACAGATTGAGCC
GGGGTGTGAGATTATTGTGCCTGGTAAGGCTAAGAAGAAAGGGAACATAGCTAATATTTTAGGTTATGCTACTTCCTTCA
GTTCTTTGGGAATGATGATTGCTTCTATTGCTAATTTGATAAAGAAATAA

Upstream 100 bases:

>100_bases
CCGTCTGTCATGGGATGCAGGAACTGTGTGAAATCAACTGAAACTTTTTTATTTGTCAATGAAAATACAACGACTTTTTA
GCATTCTACTCTTCTGTTTG

Downstream 100 bases:

>100_bases
ATGACCTATTATGATTGAAAAGCAATCTTATCAAGAACCGTTTTCTGAAGTGGATAAAAGGAAAGATGATGAAATGGAAA
TAGACTTGATGGCTATTTTT

Product: polysialic acid transport protein kpsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 789

Protein sequence:

>789_residues
MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNNVNTSKSTGTDINESRLREET
KKNTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSVNLATPANYRLGPGDEVIIDIWGASQNTIRQQISPEGTINI
QKIGPVNLSGMTVSAANDYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA
GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISGKVKRPMRFEMKKEENLATLI
KYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYNIYKMRNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTI
RELVHEAQGLTGDAFLNRAVLYRQREDLTSEVVQIDIKSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAHPD
SYPYADNMTLEDLIIQAGGLKEAASTVRIDISRRIKNPRSTADNDTIGQMYTFSLKDGFVIDGQPGFILEPYDQVYVRRS
PGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGPTNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMID
SLGIRVEDTFTVGIDLEKALSNPKSNADLVLREGDVISIPKNTNTVTINGAVMVPNTVSYMKGKNVDYYLNQAGGCSDNA
RKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPGKAKKKGNIANILGYATSFSSLGMMIASIANLIKK

Sequences:

>Translated_789_residues
MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNNVNTSKSTGTDINESRLREET
KKNTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSVNLATPANYRLGPGDEVIIDIWGASQNTIRQQISPEGTINI
QKIGPVNLSGMTVSAANDYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA
GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISGKVKRPMRFEMKKEENLATLI
KYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYNIYKMRNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTI
RELVHEAQGLTGDAFLNRAVLYRQREDLTSEVVQIDIKSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAHPD
SYPYADNMTLEDLIIQAGGLKEAASTVRIDISRRIKNPRSTADNDTIGQMYTFSLKDGFVIDGQPGFILEPYDQVYVRRS
PGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGPTNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMID
SLGIRVEDTFTVGIDLEKALSNPKSNADLVLREGDVISIPKNTNTVTINGAVMVPNTVSYMKGKNVDYYLNQAGGCSDNA
RKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPGKAKKKGNIANILGYATSFSSLGMMIASIANLIKK
>Mature_789_residues
MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNNVNTSKSTGTDINESRLREET
KKNTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSVNLATPANYRLGPGDEVIIDIWGASQNTIRQQISPEGTINI
QKIGPVNLSGMTVSAANDYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA
GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISGKVKRPMRFEMKKEENLATLI
KYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYNIYKMRNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTI
RELVHEAQGLTGDAFLNRAVLYRQREDLTSEVVQIDIKSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAHPD
SYPYADNMTLEDLIIQAGGLKEAASTVRIDISRRIKNPRSTADNDTIGQMYTFSLKDGFVIDGQPGFILEPYDQVYVRRS
PGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGPTNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMID
SLGIRVEDTFTVGIDLEKALSNPKSNADLVLREGDVISIPKNTNTVTINGAVMVPNTVSYMKGKNVDYYLNQAGGCSDNA
RKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPGKAKKKGNIANILGYATSFSSLGMMIASIANLIKK

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 87171; Mature: 87171

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNN
CCCCCCHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
VNTSKSTGTDINESRLREETKKNTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSV
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHHHCCHHHHCCCCCCCCCEEECCCC
NLATPANYRLGPGDEVIIDIWGASQNTIRQQISPEGTINIQKIGPVNLSGMTVSAANDYL
CCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEHHHHHHH
KNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA
HHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC
GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISG
CCCCHHHCCCCEEEEECCCCEEEEHHHHHHHCCCCCCCCEEECCCEEEEECCEEEEEECC
KVKRPMRFEMKKEENLATLIKYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYNIYKM
CCCCCCEECCCHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
RNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTIRELVHEAQGLTGDAFLNRAV
CCCCEEEHHHHHHHCCCCEEECEEEECCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHH
LYRQREDLTSEVVQIDIKSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAHPD
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCCCCCCCCEEEEEEECCCC
SYPYADNMTLEDLIIQAGGLKEAASTVRIDISRRIKNPRSTADNDTIGQMYTFSLKDGFV
CCCCCCCCCHHHHHHHCCCCHHHHHEEEEEEHHHCCCCCCCCCCCCCCCEEEEEECCCEE
IDGQPGFILEPYDQVYVRRSPGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGP
ECCCCCCEECCCHHEEEECCCCCCCCCCEEEEEEEEECCCEEECCHHHHHHHHHHHCCCC
TNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMIDSLGIRVEDTFTVGIDLEKAL
CCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHH
SNPKSNADLVLREGDVISIPKNTNTVTINGAVMVPNTVSYMKGKNVDYYLNQAGGCSDNA
CCCCCCCCEEEECCCEEECCCCCCEEEEEEEEECCCCHHHHCCCCCEEEECCCCCCCCCC
RKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPGKAKKKGNIANILGYATSFSSLGMMI
CCCCEEEEEECCEEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
ASIANLIKK
HHHHHHHCC
>Mature Secondary Structure
MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNN
CCCCCCHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
VNTSKSTGTDINESRLREETKKNTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSV
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHHHCCHHHHCCCCCCCCCEEECCCC
NLATPANYRLGPGDEVIIDIWGASQNTIRQQISPEGTINIQKIGPVNLSGMTVSAANDYL
CCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEHHHHHHH
KNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA
HHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC
GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISG
CCCCHHHCCCCEEEEECCCCEEEEHHHHHHHCCCCCCCCEEECCCEEEEECCEEEEEECC
KVKRPMRFEMKKEENLATLIKYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYNIYKM
CCCCCCEECCCHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
RNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTIRELVHEAQGLTGDAFLNRAV
CCCCEEEHHHHHHHCCCCEEECEEEECCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHH
LYRQREDLTSEVVQIDIKSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAHPD
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCCCCCCCCEEEEEEECCCC
SYPYADNMTLEDLIIQAGGLKEAASTVRIDISRRIKNPRSTADNDTIGQMYTFSLKDGFV
CCCCCCCCCHHHHHHHCCCCHHHHHEEEEEEHHHCCCCCCCCCCCCCCCEEEEEECCCEE
IDGQPGFILEPYDQVYVRRSPGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGP
ECCCCCCEECCCHHEEEECCCCCCCCCCEEEEEEEEECCCEEECCHHHHHHHHHHHCCCC
TNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMIDSLGIRVEDTFTVGIDLEKAL
CCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHH
SNPKSNADLVLREGDVISIPKNTNTVTINGAVMVPNTVSYMKGKNVDYYLNQAGGCSDNA
CCCCCCCCEEEECCCEEECCCCCCEEEEEEEEECCCCHHHHCCCCCEEEECCCCCCCCCC
RKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPGKAKKKGNIANILGYATSFSSLGMMI
CCCCEEEEEECCEEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
ASIANLIKK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]