| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347092
Identifier: 29347092
GI number: 29347092
Start: 2073899
End: 2075854
Strand: Reverse
Name: 29347092
Synonym: BT_1682
Alternate gene names: NA
Gene position: 2075854-2073899 (Counterclockwise)
Preceding gene: 29347093
Following gene: 29347091
Centisome position: 33.16
GC content: 42.18
Gene sequence:
>1956_bases ATGAAAAAGATATATAGTTTAGTTCTACTTGTTGCCGGTGTTTTTTCTTGGGGCTCTTGCAGTCTTGATGAAGTGAACCC CAACAACTCGGGTCAGTTCTCCGATGGTTCTTATACATTGGAAACTTATAAGGCATTCACCAACTCGTGCTATACAGCCT TGATCAACAACATCTATCAGAGTAGTGACTATCTGGTTTGTACGGAAGCGGGTACTGATATTTGGGAAGAACCTAAATCG GGCTCCAGCTATCAGCGTTATCATAGTTATAACGGTATGAAAACCGATGATAGCTATTATTATAAAGTGTGGCAATATTC TTATCTGTGTATCAACAGCTGTAATATTGTGATTGACGGAGCTGAGAATGTGACAGGGGATGAGACTGAAATTAATGAAT GTGTGGCACAGGCCAGATGTCTGCGTGCTTACTATTATATGAATCTGGTGGAGCAGTTTGGAAATGTCGATTTGCAGTTG AAGGCTGCCGATAGCGAGAATATTTCTTTTGATGCTCACCGTTCTACCGTTCCCGAAATTTATGCTGCCATTATCGAAGA CCTGAAGTTTGCCGTAGAGAATCTGCCTGTAAGTTTCAGTGATTACTATAGCCGCGTTACAAAGAAATCGGCGATGGGAT TATTGGCACGTGCATATATTAATGGTGCCGGTTATGATCTGAAAGATACCGATGGTGTCAGCTTTCTGGAAAAAGCCTAT GATACGGCGACAACCATGATTAATAATAAAGCGATTTATGAGTGGTATATGCATCCTGCTTTTGCCGATGTATTCAACGA AAATAATAATCGTAACAATGAAGAAGCTCTGTTCATTGCTGCGGGTGCCGAAAGAAATTCGGACGCTTACACCAATGGTA ACTACTCACAAAGTGAAATGTTCCGTCACTTCTTACCTTCGTTGGGAACATATACGGATCTGGGTTTGGTAGACAAGACT TCAAACTTCGTTTACGGTCGTCCGAACAGTAATATCTTCCTGCCATCCAAATATCTGATGGACTGTTTTGCTGCTGATAT GAACGACTCTCGTTTTCGTTATTCATTTATTTCAGCTTACTCGTCTTATTCTATACCGGCATGGGGGGCGACTTATGAAT ATGGAGGTTCAGCGTGTGCCAAAGAAATCACAAGCACACTTGCTACTAAATTTGGTATTCCCGCATCTAATATAGGTAAG AAAGTTTATCCTCATTTTAACTTGGAATCCAATAGTACAGCCGATGCTAATTACTGCCAGCTGGCTATCTGGAATGCAGA TGGAACAGCGAAGACTACTCAGGATAAAACAGATGGTAATATTCTTCATCCTGCTATGCCTTTAGATCCGGCAGAAGCTC ATCAATATGCCGTTTATTGTTCTTTGAAGACGCTGACAGAAGAGGAAAAAGCTCAATATCCGGGGTTGGTTCTTAATGTT TTCGATCTTTACGATGAGAATGGAACAGCCAGGGCTACCTATGACAAGCCTAGTGCTGCCAGTGCTTTGTGGTTATCTAT TTATCCGGCTCTTTCTAAATTCAATATGCCGGGTAATAAGTTTGTCGGCAGAGACGTTCAGAGAAAAACTGTGGATGTGA TGATCATGCGTATGGCGGAAGTTTACCTGATTGCTGCTGAAGCATCGGTACGCTTGAACAAGGGAGATGCTGCCAAATAT ATTAATGTACTCCGTACGCGTGCCGGTGCCGGTACGGTCAGTGAGTCGCAAGTGGATCTGAATTATATTTTCGATGAATA TGCCCGTGAACTTTGTGGCGAATGTGCCCGCTGGTATTTGCTGAAACGTAATGCTGCTTTTGAGACTCGTTTGGCTGCTT ATAATAAGCGTGCTGCTGAGCACTTTAAGAAAGAATTCTATTTGCGTCCTATTCCTACGAAATATCTGGATGCGATCAAT AATCCGGCAGAATTCGGACAAAACGCCGGTTATTAA
Upstream 100 bases:
>100_bases ATGTGAAGAATTACGATCCGGAAATGAACGGAAGCATCAACTTCCCATTGTCTCGTGATTGCATATTTGGTCTTAATTTA ACTTTCTAAAAAATAGCAAT
Downstream 100 bases:
>100_bases TCAGTTAATTAATAATCAAGCATAATTAATAGGAGCCGGGCAGGAGATTTCTCTTGTCCGGCTCTTTGTTTCCATACCTG TATCCTGCGTAAAAGTTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: RagB/SusD Domain-Containing Protein; Outer Membrane Protein; Ragb/Susd Domain Protein; RagB/SusD Family Protein; SusD/RagB Family Protein
Number of amino acids: Translated: 651; Mature: 651
Protein sequence:
>651_residues MKKIYSLVLLVAGVFSWGSCSLDEVNPNNSGQFSDGSYTLETYKAFTNSCYTALINNIYQSSDYLVCTEAGTDIWEEPKS GSSYQRYHSYNGMKTDDSYYYKVWQYSYLCINSCNIVIDGAENVTGDETEINECVAQARCLRAYYYMNLVEQFGNVDLQL KAADSENISFDAHRSTVPEIYAAIIEDLKFAVENLPVSFSDYYSRVTKKSAMGLLARAYINGAGYDLKDTDGVSFLEKAY DTATTMINNKAIYEWYMHPAFADVFNENNNRNNEEALFIAAGAERNSDAYTNGNYSQSEMFRHFLPSLGTYTDLGLVDKT SNFVYGRPNSNIFLPSKYLMDCFAADMNDSRFRYSFISAYSSYSIPAWGATYEYGGSACAKEITSTLATKFGIPASNIGK KVYPHFNLESNSTADANYCQLAIWNADGTAKTTQDKTDGNILHPAMPLDPAEAHQYAVYCSLKTLTEEEKAQYPGLVLNV FDLYDENGTARATYDKPSAASALWLSIYPALSKFNMPGNKFVGRDVQRKTVDVMIMRMAEVYLIAAEASVRLNKGDAAKY INVLRTRAGAGTVSESQVDLNYIFDEYARELCGECARWYLLKRNAAFETRLAAYNKRAAEHFKKEFYLRPIPTKYLDAIN NPAEFGQNAGY
Sequences:
>Translated_651_residues MKKIYSLVLLVAGVFSWGSCSLDEVNPNNSGQFSDGSYTLETYKAFTNSCYTALINNIYQSSDYLVCTEAGTDIWEEPKS GSSYQRYHSYNGMKTDDSYYYKVWQYSYLCINSCNIVIDGAENVTGDETEINECVAQARCLRAYYYMNLVEQFGNVDLQL KAADSENISFDAHRSTVPEIYAAIIEDLKFAVENLPVSFSDYYSRVTKKSAMGLLARAYINGAGYDLKDTDGVSFLEKAY DTATTMINNKAIYEWYMHPAFADVFNENNNRNNEEALFIAAGAERNSDAYTNGNYSQSEMFRHFLPSLGTYTDLGLVDKT SNFVYGRPNSNIFLPSKYLMDCFAADMNDSRFRYSFISAYSSYSIPAWGATYEYGGSACAKEITSTLATKFGIPASNIGK KVYPHFNLESNSTADANYCQLAIWNADGTAKTTQDKTDGNILHPAMPLDPAEAHQYAVYCSLKTLTEEEKAQYPGLVLNV FDLYDENGTARATYDKPSAASALWLSIYPALSKFNMPGNKFVGRDVQRKTVDVMIMRMAEVYLIAAEASVRLNKGDAAKY INVLRTRAGAGTVSESQVDLNYIFDEYARELCGECARWYLLKRNAAFETRLAAYNKRAAEHFKKEFYLRPIPTKYLDAIN NPAEFGQNAGY >Mature_651_residues MKKIYSLVLLVAGVFSWGSCSLDEVNPNNSGQFSDGSYTLETYKAFTNSCYTALINNIYQSSDYLVCTEAGTDIWEEPKS GSSYQRYHSYNGMKTDDSYYYKVWQYSYLCINSCNIVIDGAENVTGDETEINECVAQARCLRAYYYMNLVEQFGNVDLQL KAADSENISFDAHRSTVPEIYAAIIEDLKFAVENLPVSFSDYYSRVTKKSAMGLLARAYINGAGYDLKDTDGVSFLEKAY DTATTMINNKAIYEWYMHPAFADVFNENNNRNNEEALFIAAGAERNSDAYTNGNYSQSEMFRHFLPSLGTYTDLGLVDKT SNFVYGRPNSNIFLPSKYLMDCFAADMNDSRFRYSFISAYSSYSIPAWGATYEYGGSACAKEITSTLATKFGIPASNIGK KVYPHFNLESNSTADANYCQLAIWNADGTAKTTQDKTDGNILHPAMPLDPAEAHQYAVYCSLKTLTEEEKAQYPGLVLNV FDLYDENGTARATYDKPSAASALWLSIYPALSKFNMPGNKFVGRDVQRKTVDVMIMRMAEVYLIAAEASVRLNKGDAAKY INVLRTRAGAGTVSESQVDLNYIFDEYARELCGECARWYLLKRNAAFETRLAAYNKRAAEHFKKEFYLRPIPTKYLDAIN NPAEFGQNAGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73078; Mature: 73078
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIYSLVLLVAGVFSWGSCSLDEVNPNNSGQFSDGSYTLETYKAFTNSCYTALINNIYQ CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHC SSDYLVCTEAGTDIWEEPKSGSSYQRYHSYNGMKTDDSYYYKVWQYSYLCINSCNIVIDG CCCEEEEECCCCCHHCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEC AENVTGDETEINECVAQARCLRAYYYMNLVEQFGNVDLQLKAADSENISFDAHRSTVPEI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCHHCHHHHH YAAIIEDLKFAVENLPVSFSDYYSRVTKKSAMGLLARAYINGAGYDLKDTDGVSFLEKAY HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH DTATTMINNKAIYEWYMHPAFADVFNENNNRNNEEALFIAAGAERNSDAYTNGNYSQSEM HHHHHHCCCCEEEEEHHCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHH FRHFLPSLGTYTDLGLVDKTSNFVYGRPNSNIFLPSKYLMDCFAADMNDSRFRYSFISAY HHHHHHCCCCCCCCCCEECCCCEEEECCCCCEECCHHHHHHHHHCCCCCCCEEHHHHHHH SSYSIPAWGATYEYGGSACAKEITSTLATKFGIPASNIGKKVYPHFNLESNSTADANYCQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEEE LAIWNADGTAKTTQDKTDGNILHPAMPLDPAEAHQYAVYCSLKTLTEEEKAQYPGLVLNV EEEECCCCCCCCCCCCCCCCEECCCCCCCHHHCCCEEEEEEEHHHCCHHHHCCCCEEEEE FDLYDENGTARATYDKPSAASALWLSIYPALSKFNMPGNKFVGRDVQRKTVDVMIMRMAE EEHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH VYLIAAEASVRLNKGDAAKYINVLRTRAGAGTVSESQVDLNYIFDEYARELCGECARWYL HEEEEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LKRNAAFETRLAAYNKRAAEHFKKEFYLRPIPTKYLDAINNPAEFGQNAGY HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHCCCCCC >Mature Secondary Structure MKKIYSLVLLVAGVFSWGSCSLDEVNPNNSGQFSDGSYTLETYKAFTNSCYTALINNIYQ CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHC SSDYLVCTEAGTDIWEEPKSGSSYQRYHSYNGMKTDDSYYYKVWQYSYLCINSCNIVIDG CCCEEEEECCCCCHHCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEC AENVTGDETEINECVAQARCLRAYYYMNLVEQFGNVDLQLKAADSENISFDAHRSTVPEI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCHHCHHHHH YAAIIEDLKFAVENLPVSFSDYYSRVTKKSAMGLLARAYINGAGYDLKDTDGVSFLEKAY HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH DTATTMINNKAIYEWYMHPAFADVFNENNNRNNEEALFIAAGAERNSDAYTNGNYSQSEM HHHHHHCCCCEEEEEHHCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHH FRHFLPSLGTYTDLGLVDKTSNFVYGRPNSNIFLPSKYLMDCFAADMNDSRFRYSFISAY HHHHHHCCCCCCCCCCEECCCCEEEECCCCCEECCHHHHHHHHHCCCCCCCEEHHHHHHH SSYSIPAWGATYEYGGSACAKEITSTLATKFGIPASNIGKKVYPHFNLESNSTADANYCQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEEE LAIWNADGTAKTTQDKTDGNILHPAMPLDPAEAHQYAVYCSLKTLTEEEKAQYPGLVLNV EEEECCCCCCCCCCCCCCCCEECCCCCCCHHHCCCEEEEEEEHHHCCHHHHCCCCEEEEE FDLYDENGTARATYDKPSAASALWLSIYPALSKFNMPGNKFVGRDVQRKTVDVMIMRMAE EEHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH VYLIAAEASVRLNKGDAAKYINVLRTRAGAGTVSESQVDLNYIFDEYARELCGECARWYL HEEEEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LKRNAAFETRLAAYNKRAAEHFKKEFYLRPIPTKYLDAINNPAEFGQNAGY HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA