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The map label for this gene is pal [C]

Identifier: 29346921

GI number: 29346921

Start: 1864461

End: 1865555

Strand: Reverse

Name: pal [C]

Synonym: BT_1511

Alternate gene names: 29346921

Gene position: 1865555-1864461 (Counterclockwise)

Preceding gene: 29346922

Following gene: 29346919

Centisome position: 29.8

GC content: 43.84

Gene sequence:

>1095_bases
ATGAAAATAAGAAATTTATTAGTAGCCATACTTGCAATGAGTGGTACAGTAGTATTTGCTCAGGAGCAACGACAAATCAA
GGAAGAAGGTAAAACCGTATTCAAACCTCATTGGTTTATCCAGGCACAAGTAGGAGCCGCACATACCGTAGGCGAAGCCA
AGTTTACCGATCTGATGTCTCCTGCCGCCGCCATCAATATAGGATATAAGTTTGCCCCTGCATTCGGAGCACGTATCGGT
GGTAGTGGATGGCAGGCAAAGGGTGGATGGGTAACTCCGGAACAAACCTACCAGTACAAATATCTTCAGGGAAACATTGA
TATTATGGCTGATCTCAGCACTTTGTTCTGTGGCTTCAACCCGAAACGTGTTTTCAATGGCTACCTTTTTGGTGGTGTAG
GGCTCAATCGTGGTTTCGATAACGATGAAGCGAATGCACTCGACACCCGCACCTATGAACTGGAATATCTCTGGCAAGAA
GGCAAGTTTCTTGTCGCCGGACGTTTTGGCTTGGGTTGTGACCTTCGCCTGAATGACCGCTTGGCCATCAATATCGAAGC
TAACGCCAACGCTTTATCCGACAAGTTCAACTCAAAGAAAGCCGGTAACTGTGACTGGCAGCTGAACGCACTCGTTGGCT
TGACCATTAAACTGGGAAAAAGCTATACCAAAACAGCTCCCGTATATTACGAACCGGAACCTGCAGTCGTAGAACAGCCT
AAACCGGAACCTGTTGTTGCAAAAGAGCCAGAACCGAAACCTGTAGTAGTTGTTGAGCCGATGAAACAGAATATATTCTT
TGCGTTAAACTCTGCACTTCTGCAAAATGATCAGTTGGCAAAGATTGATGCTATGATTAAATATATGGAGAAAAACCCAA
CCAGTAAAGTTGCTGTAACCGGATATGCCGACAAAGAAACCGGTAACCCGAAAATTAATATGACTTTGTCGGAAAAACGT
GCCAAAAATGTTGTAGAAGCCTTGAAAGCTAAAGGAATAGCAGCAGATAGAATTATTACTAGTTATAAAGGAGATACGGT
ACAGCCTTATCAGAAACCGGAAGAAAATCGTGTTTGTATCTGTATAGCAGAATGA

Upstream 100 bases:

>100_bases
TCATATAACAAAGCATATATTGGGTGATAAGATTTGCCTGATATATAGTTGTGACATATCGTATGAGATTTCTGTAACAA
GACATTAAATACATAACATT

Downstream 100 bases:

>100_bases
TGTCTACATTAAGAAGATCCTTTTCTTAAAAAAGATATTCCCTATTCTCATGCGGAGTGTTTGTTCCCCACATTTTTTTT
CGTACTTGTACGAGAACCTC

Product: outer membrane protein OmpA

Products: NA

Alternate protein names: Omp40; PG33 [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKIRNLLVAILAMSGTVVFAQEQRQIKEEGKTVFKPHWFIQAQVGAAHTVGEAKFTDLMSPAAAINIGYKFAPAFGARIG
GSGWQAKGGWVTPEQTYQYKYLQGNIDIMADLSTLFCGFNPKRVFNGYLFGGVGLNRGFDNDEANALDTRTYELEYLWQE
GKFLVAGRFGLGCDLRLNDRLAINIEANANALSDKFNSKKAGNCDWQLNALVGLTIKLGKSYTKTAPVYYEPEPAVVEQP
KPEPVVAKEPEPKPVVVVEPMKQNIFFALNSALLQNDQLAKIDAMIKYMEKNPTSKVAVTGYADKETGNPKINMTLSEKR
AKNVVEALKAKGIAADRIITSYKGDTVQPYQKPEENRVCICIAE

Sequences:

>Translated_364_residues
MKIRNLLVAILAMSGTVVFAQEQRQIKEEGKTVFKPHWFIQAQVGAAHTVGEAKFTDLMSPAAAINIGYKFAPAFGARIG
GSGWQAKGGWVTPEQTYQYKYLQGNIDIMADLSTLFCGFNPKRVFNGYLFGGVGLNRGFDNDEANALDTRTYELEYLWQE
GKFLVAGRFGLGCDLRLNDRLAINIEANANALSDKFNSKKAGNCDWQLNALVGLTIKLGKSYTKTAPVYYEPEPAVVEQP
KPEPVVAKEPEPKPVVVVEPMKQNIFFALNSALLQNDQLAKIDAMIKYMEKNPTSKVAVTGYADKETGNPKINMTLSEKR
AKNVVEALKAKGIAADRIITSYKGDTVQPYQKPEENRVCICIAE
>Mature_364_residues
MKIRNLLVAILAMSGTVVFAQEQRQIKEEGKTVFKPHWFIQAQVGAAHTVGEAKFTDLMSPAAAINIGYKFAPAFGARIG
GSGWQAKGGWVTPEQTYQYKYLQGNIDIMADLSTLFCGFNPKRVFNGYLFGGVGLNRGFDNDEANALDTRTYELEYLWQE
GKFLVAGRFGLGCDLRLNDRLAINIEANANALSDKFNSKKAGNCDWQLNALVGLTIKLGKSYTKTAPVYYEPEPAVVEQP
KPEPVVAKEPEPKPVVVVEPMKQNIFFALNSALLQNDQLAKIDAMIKYMEKNPTSKVAVTGYADKETGNPKINMTLSEKR
AKNVVEALKAKGIAADRIITSYKGDTVQPYQKPEENRVCICIAE

Specific function: May have porin activity and function in peptidoglycan binding [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 40204; Mature: 40204

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRNLLVAILAMSGTVVFAQEQRQIKEEGKTVFKPHWFIQAQVGAAHTVGEAKFTDLMS
CCHHHHHHHHHHHCCEEEEEHHHHHHHHCCCEEECCEEEEEEECCCCEECCCHHHHHHCC
PAAAINIGYKFAPAFGARIGGSGWQAKGGWVTPEQTYQYKYLQGNIDIMADLSTLFCGFN
CCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEHHHHHCCCC
PKRVFNGYLFGGVGLNRGFDNDEANALDTRTYELEYLWQEGKFLVAGRFGLGCDLRLNDR
HHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCEEEEECCE
LAINIEANANALSDKFNSKKAGNCDWQLNALVGLTIKLGKSYTKTAPVYYEPEPAVVEQP
EEEEEECCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCC
KPEPVVAKEPEPKPVVVVEPMKQNIFFALNSALLQNDQLAKIDAMIKYMEKNPTSKVAVT
CCCCCCCCCCCCCCEEEECCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEE
GYADKETGNPKINMTLSEKRAKNVVEALKAKGIAADRIITSYKGDTVQPYQKPEENRVCI
ECCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCEEE
CIAE
EEEC
>Mature Secondary Structure
MKIRNLLVAILAMSGTVVFAQEQRQIKEEGKTVFKPHWFIQAQVGAAHTVGEAKFTDLMS
CCHHHHHHHHHHHCCEEEEEHHHHHHHHCCCEEECCEEEEEEECCCCEECCCHHHHHHCC
PAAAINIGYKFAPAFGARIGGSGWQAKGGWVTPEQTYQYKYLQGNIDIMADLSTLFCGFN
CCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEHHHHHCCCC
PKRVFNGYLFGGVGLNRGFDNDEANALDTRTYELEYLWQEGKFLVAGRFGLGCDLRLNDR
HHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCEEEEECCE
LAINIEANANALSDKFNSKKAGNCDWQLNALVGLTIKLGKSYTKTAPVYYEPEPAVVEQP
EEEEEECCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCC
KPEPVVAKEPEPKPVVVVEPMKQNIFFALNSALLQNDQLAKIDAMIKYMEKNPTSKVAVT
CCCCCCCCCCCCCCEEEECCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEE
GYADKETGNPKINMTLSEKRAKNVVEALKAKGIAADRIITSYKGDTVQPYQKPEENRVCI
ECCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCEEE
CIAE
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11457538; 12949112; 11532011 [H]