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The map label for this gene is rhaS [C]

Identifier: 29346814

GI number: 29346814

Start: 1732613

End: 1733503

Strand: Reverse

Name: rhaS [C]

Synonym: BT_1404

Alternate gene names: 29346814

Gene position: 1733503-1732613 (Counterclockwise)

Preceding gene: 29346816

Following gene: 29346812

Centisome position: 27.69

GC content: 41.3

Gene sequence:

>891_bases
ATGGTAAAATCTCGTATTTTTGATAATAGGCAGTTGTTAAAGGAACATCCGGAAATTCCTCATTATAAAGAGGAAGTAGT
CTGCTTTATGAGTGAATATAAGGACAGGAGCTATCCGGAAAACGAACGTTACTTTAATCGTGAACTTTATATGATACTCG
TTCTTGAAGGTCGTTCCGAGATTTTGCTGAATGGGGAATTTATTGTGATAGAGCCTGATATGTTGCTTGTTCATGGAGCG
AATTATCTCACCGACCATCTTTATTCGAGTCCGGATATTAAGTTTATCACCCTCTCCATTTCCGAGTCCATGCGGACGGA
TGACTCTTATCTTACCCAGATAACGGCTATTCTGTTGGCAACGATGAGGCAGAATAAGCAATATACCATACAGCTGACCG
CATACGAATCTCAAATCATTCGTAATGAACTGGAAGTGTTGATGCGTTTGCTGAATATAAAACATCAGTTTCTTTTCCGG
CGAATACAGGCGGCTTGCAATGCCTTATTTTTGGATATAGCCGATTTTCTTTCCCGAAAGACTATCATAAAAAAGGAGGT
CAGTCGTAAAGACCATGTTTTACAGGAATTTCATGCGCTTGTTACCCGAAATTTCAGAGAAGAGCATTTCGTTAGTTTCT
ATGCGGATAAGCTGGCCATCAGTGAGCAGTACCTTGCACGTATCGTTCGTGCCGGAACGGGAAAAAGTGTGAATACGATT
ATTAATGAGTTACTGATCATGGAAGCCCGTACCTTGCTGAGTTCCACTAAATCTACGGTAGGGGATATTGCTTCCCGGCT
TGGCTTTAGTGATGCTGCCGGTTTCTGTAAGTTTTTCAAGAGGAATATGGGGCAGACTCCTCTCAATTATCGGAAGGGAT
TATGGATTTAA

Upstream 100 bases:

>100_bases
AGGTCCCGTTTTTTCGTCTGATATAAGTTATCCGATTCCACACAGTTTTTGTCATATCCGAAACAAATTGTACTTTTACG
TCGAAAAGAAGGAGGTATAA

Downstream 100 bases:

>100_bases
GTGAAAATGAATGTAGGTTGATGTGATCCCATAACGAACGGATACATCAACCTACATGAAATATATAATGAACTGGTTTT
GACTTATCAGCCAATGAGTG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; Phosphomethylpyrimidine Kinase; Transcriptional Regulator Arac Family; Transcription Regulator; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulatory Protein; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; AraC Family Transcription Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC-Type Transcriptional Regulator; Transcriptional Regulator Protein; AraC Protein; AraC Family Regulatory Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MVKSRIFDNRQLLKEHPEIPHYKEEVVCFMSEYKDRSYPENERYFNRELYMILVLEGRSEILLNGEFIVIEPDMLLVHGA
NYLTDHLYSSPDIKFITLSISESMRTDDSYLTQITAILLATMRQNKQYTIQLTAYESQIIRNELEVLMRLLNIKHQFLFR
RIQAACNALFLDIADFLSRKTIIKKEVSRKDHVLQEFHALVTRNFREEHFVSFYADKLAISEQYLARIVRAGTGKSVNTI
INELLIMEARTLLSSTKSTVGDIASRLGFSDAAGFCKFFKRNMGQTPLNYRKGLWI

Sequences:

>Translated_296_residues
MVKSRIFDNRQLLKEHPEIPHYKEEVVCFMSEYKDRSYPENERYFNRELYMILVLEGRSEILLNGEFIVIEPDMLLVHGA
NYLTDHLYSSPDIKFITLSISESMRTDDSYLTQITAILLATMRQNKQYTIQLTAYESQIIRNELEVLMRLLNIKHQFLFR
RIQAACNALFLDIADFLSRKTIIKKEVSRKDHVLQEFHALVTRNFREEHFVSFYADKLAISEQYLARIVRAGTGKSVNTI
INELLIMEARTLLSSTKSTVGDIASRLGFSDAAGFCKFFKRNMGQTPLNYRKGLWI
>Mature_296_residues
MVKSRIFDNRQLLKEHPEIPHYKEEVVCFMSEYKDRSYPENERYFNRELYMILVLEGRSEILLNGEFIVIEPDMLLVHGA
NYLTDHLYSSPDIKFITLSISESMRTDDSYLTQITAILLATMRQNKQYTIQLTAYESQIIRNELEVLMRLLNIKHQFLFR
RIQAACNALFLDIADFLSRKTIIKKEVSRKDHVLQEFHALVTRNFREEHFVSFYADKLAISEQYLARIVRAGTGKSVNTI
INELLIMEARTLLSSTKSTVGDIASRLGFSDAAGFCKFFKRNMGQTPLNYRKGLWI

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34602; Mature: 34602

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSRIFDNRQLLKEHPEIPHYKEEVVCFMSEYKDRSYPENERYFNRELYMILVLEGRSE
CCCCHHCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEEEEEECCCE
ILLNGEFIVIEPDMLLVHGANYLTDHLYSSPDIKFITLSISESMRTDDSYLTQITAILLA
EEECCEEEEECCCEEEEECCHHHHHHHCCCCCCEEEEEEECCHHCCCHHHHHHHHHHHHH
TMRQNKQYTIQLTAYESQIIRNELEVLMRLLNIKHQFLFRRIQAACNALFLDIADFLSRK
HHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIIKKEVSRKDHVLQEFHALVTRNFREEHFVSFYADKLAISEQYLARIVRAGTGKSVNTI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
INELLIMEARTLLSSTKSTVGDIASRLGFSDAAGFCKFFKRNMGQTPLNYRKGLWI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVKSRIFDNRQLLKEHPEIPHYKEEVVCFMSEYKDRSYPENERYFNRELYMILVLEGRSE
CCCCHHCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEEEEEECCCE
ILLNGEFIVIEPDMLLVHGANYLTDHLYSSPDIKFITLSISESMRTDDSYLTQITAILLA
EEECCEEEEECCCEEEEECCHHHHHHHCCCCCCEEEEEEECCHHCCCHHHHHHHHHHHHH
TMRQNKQYTIQLTAYESQIIRNELEVLMRLLNIKHQFLFRRIQAACNALFLDIADFLSRK
HHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIIKKEVSRKDHVLQEFHALVTRNFREEHFVSFYADKLAISEQYLARIVRAGTGKSVNTI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
INELLIMEARTLLSSTKSTVGDIASRLGFSDAAGFCKFFKRNMGQTPLNYRKGLWI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA