Click here to switch to the map view.

The map label for this gene is rfbJ [H]

Identifier: 29346758

GI number: 29346758

Start: 1673648

End: 1674538

Strand: Reverse

Name: rfbJ [H]

Synonym: BT_1348

Alternate gene names: 29346758

Gene position: 1674538-1673648 (Counterclockwise)

Preceding gene: 29346759

Following gene: 29346757

Centisome position: 26.75

GC content: 29.85

Gene sequence:

>891_bases
ATGAAAATTCTGATTACTGGAGCTACCGGATTTGTTGGAAGAAATCTTGTTCCTTATTTGTTTAGTCATGGATTTGTAGA
ATTGGCAATTGCCGTGAGAGATCCTCAGAAAGCTATTTCTATGTTTGAAAGTATTCCTTTAACTTATATTTCTTGTGAAA
GGACATTTCGCCAACAGATTATTGATTTTGCTCCTGAGGTAGTAATACATTTAGCTACTAATTTCAATTTTCATTCAGAT
GAAAAATCAGTAAGAGATATAGTTGATGCTAATATATTATTTGGTTCTCTCTTATTGGAAGCTGTTAGTTATACTCCATG
TAAATTCTTTATCAATTTGGGTACATTTGCAGAGTATTATTATAATGATGGGAATTTTTTACCTAATACATTTTATGCTG
CTACTAAAACAGCTTTTCGTTCCATTATTCAATATTATCAACTGAAAGGTGATTTTAAATGGATAAATTTGATTGGTTAT
ACAATTTATGGCAAAAAAAATGATAGTAAGAAAATAATTGATTATTTGATCGATGCGCTAAATTCACCTATACCATTGAA
TTTTACAAAAGGAGAACAGATTAATGATTTTATACATATAAATGATGTCTCTGATTTCTTTTATGTGTTACTGTCTAATT
TGAATTTGTTAGAAGATACTATGTATACTCAGCTATATCTAGGAACGGGGAAGGGTACTTCTATCAGGGAATTGTCATAC
ATTATAGAGACTGTGTATAAACAAAAGGTTAATGCAAATTGGGGTGGATTGTCATATAGACCATACGATATTATGTATGC
AGTGGCACCTATATCTAGGAATCTTGATTTATTAAAATGGAAAACAAAAATAAGTCTTGAAGAAGGCATAAAAATGTTAC
GATACGAATAA

Upstream 100 bases:

>100_bases
CAAAAGGTAAATCTATGCTTATGAATGTGATACCAGAACCGCATGATCCGACAGAATCTGATAGAAAAGAGTTGTCTGAA
ATACCCTATATTTTTAAGAT

Downstream 100 bases:

>100_bases
TTATAGAATTGGCTTAGAACTCAGAATGAAAATAGCTTGTGTAGTATTAACTTATAATAGATTATCTCTTTTAAAAAGAT
GTATTGATAGTATTCGTAAT

Product: CDP-abequose synthase

Products: NA

Alternate protein names: O4 antigen [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MKILITGATGFVGRNLVPYLFSHGFVELAIAVRDPQKAISMFESIPLTYISCERTFRQQIIDFAPEVVIHLATNFNFHSD
EKSVRDIVDANILFGSLLLEAVSYTPCKFFINLGTFAEYYYNDGNFLPNTFYAATKTAFRSIIQYYQLKGDFKWINLIGY
TIYGKKNDSKKIIDYLIDALNSPIPLNFTKGEQINDFIHINDVSDFFYVLLSNLNLLEDTMYTQLYLGTGKGTSIRELSY
IIETVYKQKVNANWGGLSYRPYDIMYAVAPISRNLDLLKWKTKISLEEGIKMLRYE

Sequences:

>Translated_296_residues
MKILITGATGFVGRNLVPYLFSHGFVELAIAVRDPQKAISMFESIPLTYISCERTFRQQIIDFAPEVVIHLATNFNFHSD
EKSVRDIVDANILFGSLLLEAVSYTPCKFFINLGTFAEYYYNDGNFLPNTFYAATKTAFRSIIQYYQLKGDFKWINLIGY
TIYGKKNDSKKIIDYLIDALNSPIPLNFTKGEQINDFIHINDVSDFFYVLLSNLNLLEDTMYTQLYLGTGKGTSIRELSY
IIETVYKQKVNANWGGLSYRPYDIMYAVAPISRNLDLLKWKTKISLEEGIKMLRYE
>Mature_296_residues
MKILITGATGFVGRNLVPYLFSHGFVELAIAVRDPQKAISMFESIPLTYISCERTFRQQIIDFAPEVVIHLATNFNFHSD
EKSVRDIVDANILFGSLLLEAVSYTPCKFFINLGTFAEYYYNDGNFLPNTFYAATKTAFRSIIQYYQLKGDFKWINLIGY
TIYGKKNDSKKIIDYLIDALNSPIPLNFTKGEQINDFIHINDVSDFFYVLLSNLNLLEDTMYTQLYLGTGKGTSIRELSY
IIETVYKQKVNANWGGLSYRPYDIMYAVAPISRNLDLLKWKTKISLEEGIKMLRYE

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 34067; Mature: 34067

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILITGATGFVGRNLVPYLFSHGFVELAIAVRDPQKAISMFESIPLTYISCERTFRQQI
CEEEEECCCCCHHCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCEEEEHHHHHHHHHH
IDFAPEVVIHLATNFNFHSDEKSVRDIVDANILFGSLLLEAVSYTPCKFFINLGTFAEYY
HHHCHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHEEEE
YNDGNFLPNTFYAATKTAFRSIIQYYQLKGDFKWINLIGYTIYGKKNDSKKIIDYLIDAL
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHH
NSPIPLNFTKGEQINDFIHINDVSDFFYVLLSNLNLLEDTMYTQLYLGTGKGTSIRELSY
CCCCCCEECCCCCCCCEEEECCHHHHHHHHHHCCCHHHHHHEEEEEEECCCCCHHHHHHH
IIETVYKQKVNANWGGLSYRPYDIMYAVAPISRNLDLLKWKTKISLEEGIKMLRYE
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEHEECHHHHHHHHCCC
>Mature Secondary Structure
MKILITGATGFVGRNLVPYLFSHGFVELAIAVRDPQKAISMFESIPLTYISCERTFRQQI
CEEEEECCCCCHHCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCEEEEHHHHHHHHHH
IDFAPEVVIHLATNFNFHSDEKSVRDIVDANILFGSLLLEAVSYTPCKFFINLGTFAEYY
HHHCHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHEEEE
YNDGNFLPNTFYAATKTAFRSIIQYYQLKGDFKWINLIGYTIYGKKNDSKKIIDYLIDAL
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHH
NSPIPLNFTKGEQINDFIHINDVSDFFYVLLSNLNLLEDTMYTQLYLGTGKGTSIRELSY
CCCCCCEECCCCCCCCEEEECCHHHHHHHHHHCCCHHHHHHEEEEEEECCCCCHHHHHHH
IIETVYKQKVNANWGGLSYRPYDIMYAVAPISRNLDLLKWKTKISLEEGIKMLRYE
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEHEECHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2793832; 1710759; 11677609 [H]