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The map label for this gene is ygaD [C]

Identifier: 29346327

GI number: 29346327

Start: 1127189

End: 1128349

Strand: Reverse

Name: ygaD [C]

Synonym: BT_0917

Alternate gene names: 29346327

Gene position: 1128349-1127189 (Counterclockwise)

Preceding gene: 29346328

Following gene: 29346326

Centisome position: 18.02

GC content: 47.29

Gene sequence:

>1161_bases
ATGGGGCAGGAATTAAATAAGATAGGTATCGAAGTTCTACGCATTGTTTCGATCCGTGATCGGGAAGAAGAGATCATGGA
AGCAGTAGATAATGCGATGAAAAGGGTGAATATCGTTCTGGTAACCGGAGGACTCGGTCCCACAAAAGACGATATCACCA
AACAAACTCTCTGTAAATACTTCCATACCGAACTGATATTCAGCGAAGAAGTATTTGAGAACGTAAAGCGGGTGCTTGCC
GGGAAAATACCGATGAATGCGCTGAATAAGAGTCAGGCAATGGTTCCCAAAGATTGCACGGTCATCAACAATCCGGTAGG
AAGCGCTTCTGTCAGCTGGTTTGAGAAAGACAATAAAGTACTCGTATCCATGCCGGGTGTTCCGCAGGAAATGACTGCCG
TTATGACTGAGTCCGTATTGCCCAAGCTACGTGAGAAGTTTCAGACGGATGTAATCATGCACCGGACCTTTCTAGTACAA
CATTACCCCGAATCCATACTCGCTGAAAAGCTGGAACCGTGGGAGACAGCCTTGCCGGAAAGCATCAAATTGGCATATCT
GCCCAAACTTGGAATCATCCGCCTGCGACTAACCGGACGGGGACAGAACAAGATAGAAGTGGAAAGCGCACTGAACGACG
AGCAGGCTAAGCTGGAAGCGATACTGGGCGATGATATTTTCAGCGAAGAAGATATCCCACTGGAGGTAATCGTAGGCGAA
CTGCTGAAAAAGAAGAATTTAACCGTTTCCACCGCAGAAAGTTGCACCGGAGGAAGTATTGCGGCACGTCTGACGTCCAT
TGCCGGAAGTTCGGAATACTTTAATGGAGGAATAGTGGCATATTCTAACGAAGTGAAGATGAATCTGCTCCATGTTTCAC
CGGAAACACTGGAAGTGTATGGCGCTGTCAGTGAGCAGACTGTGATCGAAATGGTAAAAGGAGCGATGAAAGCGCTGAAA
ACCGACTGCGCTGTCGCAACTTCAGGAATTGCCGGTCCCGGAGGTGGAACACCGGAGAAACCGGTAGGCACTGTCTGGAT
CGCTGCTGGTTATAAAAATGAAATTCGTACTTACAGGCAGGAAACGAACCGCGGAAGAGCCATGAATATTGAAAGAGCGG
GCAATAATGCGCTATTAATTCTTCGTGATTTGCTCAAATAA

Upstream 100 bases:

>100_bases
ATATTCTATTAACTAACGTAGGAAAAAGATGTTTGCTGAAGTTATTACCATTGGTGACGAGCTGCTGATAGGGCAGGTAG
TCGATACAAATTCTGCCTGG

Downstream 100 bases:

>100_bases
GGAAAAATTGGTGTCTGGAAGTGAATTATTTTAAGAAATCCTTGTTTTATACGGATAAAAGTGCTTACTTTGCGTCCTGT
TTGAAATAAGTATAGATATA

Product: competence-damage inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MGQELNKIGIEVLRIVSIRDREEEIMEAVDNAMKRVNIVLVTGGLGPTKDDITKQTLCKYFHTELIFSEEVFENVKRVLA
GKIPMNALNKSQAMVPKDCTVINNPVGSASVSWFEKDNKVLVSMPGVPQEMTAVMTESVLPKLREKFQTDVIMHRTFLVQ
HYPESILAEKLEPWETALPESIKLAYLPKLGIIRLRLTGRGQNKIEVESALNDEQAKLEAILGDDIFSEEDIPLEVIVGE
LLKKKNLTVSTAESCTGGSIAARLTSIAGSSEYFNGGIVAYSNEVKMNLLHVSPETLEVYGAVSEQTVIEMVKGAMKALK
TDCAVATSGIAGPGGGTPEKPVGTVWIAAGYKNEIRTYRQETNRGRAMNIERAGNNALLILRDLLK

Sequences:

>Translated_386_residues
MGQELNKIGIEVLRIVSIRDREEEIMEAVDNAMKRVNIVLVTGGLGPTKDDITKQTLCKYFHTELIFSEEVFENVKRVLA
GKIPMNALNKSQAMVPKDCTVINNPVGSASVSWFEKDNKVLVSMPGVPQEMTAVMTESVLPKLREKFQTDVIMHRTFLVQ
HYPESILAEKLEPWETALPESIKLAYLPKLGIIRLRLTGRGQNKIEVESALNDEQAKLEAILGDDIFSEEDIPLEVIVGE
LLKKKNLTVSTAESCTGGSIAARLTSIAGSSEYFNGGIVAYSNEVKMNLLHVSPETLEVYGAVSEQTVIEMVKGAMKALK
TDCAVATSGIAGPGGGTPEKPVGTVWIAAGYKNEIRTYRQETNRGRAMNIERAGNNALLILRDLLK
>Mature_385_residues
GQELNKIGIEVLRIVSIRDREEEIMEAVDNAMKRVNIVLVTGGLGPTKDDITKQTLCKYFHTELIFSEEVFENVKRVLAG
KIPMNALNKSQAMVPKDCTVINNPVGSASVSWFEKDNKVLVSMPGVPQEMTAVMTESVLPKLREKFQTDVIMHRTFLVQH
YPESILAEKLEPWETALPESIKLAYLPKLGIIRLRLTGRGQNKIEVESALNDEQAKLEAILGDDIFSEEDIPLEVIVGEL
LKKKNLTVSTAESCTGGSIAARLTSIAGSSEYFNGGIVAYSNEVKMNLLHVSPETLEVYGAVSEQTVIEMVKGAMKALKT
DCAVATSGIAGPGGGTPEKPVGTVWIAAGYKNEIRTYRQETNRGRAMNIERAGNNALLILRDLLK

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=111, Percent_Identity=58.5585585585586, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788583, Length=262, Percent_Identity=25.9541984732824, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787818, Length=121, Percent_Identity=37.1900826446281, Blast_Score=92, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6323832, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 42388; Mature: 42256

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQELNKIGIEVLRIVSIRDREEEIMEAVDNAMKRVNIVLVTGGLGPTKDDITKQTLCKY
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHH
FHTELIFSEEVFENVKRVLAGKIPMNALNKSQAMVPKDCTVINNPVGSASVSWFEKDNKV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCEE
LVSMPGVPQEMTAVMTESVLPKLREKFQTDVIMHRTFLVQHYPESILAEKLEPWETALPE
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCCC
SIKLAYLPKLGIIRLRLTGRGQNKIEVESALNDEQAKLEAILGDDIFSEEDIPLEVIVGE
CEEEEEECCCCEEEEEEECCCCCCEEHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
LLKKKNLTVSTAESCTGGSIAARLTSIAGSSEYFNGGIVAYSNEVKMNLLHVSPETLEVY
HHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEECCCCEEEE
GAVSEQTVIEMVKGAMKALKTDCAVATSGIAGPGGGTPEKPVGTVWIAAGYKNEIRTYRQ
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH
ETNRGRAMNIERAGNNALLILRDLLK
HCCCCCEEEEEECCCCEEEEEHHHHC
>Mature Secondary Structure 
GQELNKIGIEVLRIVSIRDREEEIMEAVDNAMKRVNIVLVTGGLGPTKDDITKQTLCKY
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHH
FHTELIFSEEVFENVKRVLAGKIPMNALNKSQAMVPKDCTVINNPVGSASVSWFEKDNKV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCEE
LVSMPGVPQEMTAVMTESVLPKLREKFQTDVIMHRTFLVQHYPESILAEKLEPWETALPE
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCCC
SIKLAYLPKLGIIRLRLTGRGQNKIEVESALNDEQAKLEAILGDDIFSEEDIPLEVIVGE
CEEEEEECCCCEEEEEEECCCCCCEEHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
LLKKKNLTVSTAESCTGGSIAARLTSIAGSSEYFNGGIVAYSNEVKMNLLHVSPETLEVY
HHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEECCCCEEEE
GAVSEQTVIEMVKGAMKALKTDCAVATSGIAGPGGGTPEKPVGTVWIAAGYKNEIRTYRQ
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH
ETNRGRAMNIERAGNNALLILRDLLK
HCCCCCEEEEEECCCCEEEEEHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA