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The map label for this gene is ytdP [H]

Identifier: 29346138

GI number: 29346138

Start: 902016

End: 902915

Strand: Reverse

Name: ytdP [H]

Synonym: BT_0728

Alternate gene names: 29346138

Gene position: 902915-902016 (Counterclockwise)

Preceding gene: 29346139

Following gene: 29346137

Centisome position: 14.42

GC content: 43.56

Gene sequence:

>900_bases
ATGGGAGATAAAGTACTTAAGATAGGAAGTGTGCATCAATGTAATTGCTGCATGGGGAGTAAGACACTGCACCCTCTGGT
CAGTGTCATCGACCTTTCAAAAGCCGATTTATCCTCCCATACGGATTTCAAATTCGGATTTTACACGATTCTGTTGAGCG
AATGCAAATGTGAAGCCTACAGATACGGACATCAGTACTACGACTTCTCGGACGGGACACTTCTCTGTCTGACTCCCGGC
GAGTCAATCAGTATGAAGGATAGTGACAACACACGTCCTTCCAAAGGATGGATACTGGCGTTTCATCCCGACTTGATCTG
CGGCACTGCGCTTGGAGCGAACATTCGTGACTATACTTTCTTCTCTTATCGTCCCGAAGAAGCACTGCATGTTTCATTAC
GTGAAAAACAGGTCATACTGGAACTTCTGGATAAAATAAATGAAGAATTGCAACGCTGCATCGACTGCTATAGTCAGAAG
ATCATTTCCAAATACATCGAACTACTGCTTGATTATTGCGAACGCTTCTACGAACGCCAGTTCATCACACGCAATGAGGC
TAACAAAAAGATTATCGAACGGTTTGACCGTCTTTTGGATGATCATTTCAATACTATACAAAGTCAGTCCTCCGATCTTC
CCACTATTGAGGAGTGCGTCAGAGTACTTCGTCTTTCTCCCGCATATTTCAATGATTTGCTGGAATATGAAACAGGGAAG
TCGTACAAAGAATACCTTCAGTTCAAGCGTTTCGAGATAGCTAAAGAGTGGTTGATAAATACAGATAAAACACTCAGCCA
GATAGCGCAGGAACTCGGTTTCCGGAATCCGCAATATTTCAGCCGCCTGTTTAAGAAGATCACCGGTTGTTTGCCGAATG
ATTTCAAGATGCCTAACTGA

Upstream 100 bases:

>100_bases
GCATTTCAGCCGATTGTTCAAGAAGAATGTCGGATGTACGCCAAACGAATATAAGCAACAGAACTAAAACAGCTCCATTA
ATCAGGATATTAGTTACGTC

Downstream 100 bases:

>100_bases
CTTTTCTCTTAATAAAAATAGAATTGAGAATTCAAATTCTTAATCAATGTTATAAAACATACTATTTTCCTTGGATAATT
TGCAAAGTTCACAGAAGTCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MGDKVLKIGSVHQCNCCMGSKTLHPLVSVIDLSKADLSSHTDFKFGFYTILLSECKCEAYRYGHQYYDFSDGTLLCLTPG
ESISMKDSDNTRPSKGWILAFHPDLICGTALGANIRDYTFFSYRPEEALHVSLREKQVILELLDKINEELQRCIDCYSQK
IISKYIELLLDYCERFYERQFITRNEANKKIIERFDRLLDDHFNTIQSQSSDLPTIEECVRVLRLSPAYFNDLLEYETGK
SYKEYLQFKRFEIAKEWLINTDKTLSQIAQELGFRNPQYFSRLFKKITGCLPNDFKMPN

Sequences:

>Translated_299_residues
MGDKVLKIGSVHQCNCCMGSKTLHPLVSVIDLSKADLSSHTDFKFGFYTILLSECKCEAYRYGHQYYDFSDGTLLCLTPG
ESISMKDSDNTRPSKGWILAFHPDLICGTALGANIRDYTFFSYRPEEALHVSLREKQVILELLDKINEELQRCIDCYSQK
IISKYIELLLDYCERFYERQFITRNEANKKIIERFDRLLDDHFNTIQSQSSDLPTIEECVRVLRLSPAYFNDLLEYETGK
SYKEYLQFKRFEIAKEWLINTDKTLSQIAQELGFRNPQYFSRLFKKITGCLPNDFKMPN
>Mature_298_residues
GDKVLKIGSVHQCNCCMGSKTLHPLVSVIDLSKADLSSHTDFKFGFYTILLSECKCEAYRYGHQYYDFSDGTLLCLTPGE
SISMKDSDNTRPSKGWILAFHPDLICGTALGANIRDYTFFSYRPEEALHVSLREKQVILELLDKINEELQRCIDCYSQKI
ISKYIELLLDYCERFYERQFITRNEANKKIIERFDRLLDDHFNTIQSQSSDLPTIEECVRVLRLSPAYFNDLLEYETGKS
YKEYLQFKRFEIAKEWLINTDKTLSQIAQELGFRNPQYFSRLFKKITGCLPNDFKMPN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34927; Mature: 34796

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDKVLKIGSVHQCNCCMGSKTLHPLVSVIDLSKADLSSHTDFKFGFYTILLSECKCEAY
CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
RYGHQYYDFSDGTLLCLTPGESISMKDSDNTRPSKGWILAFHPDLICGTALGANIRDYTF
HHCCCEEECCCCEEEEECCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEE
FSYRPEEALHVSLREKQVILELLDKINEELQRCIDCYSQKIISKYIELLLDYCERFYERQ
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FITRNEANKKIIERFDRLLDDHFNTIQSQSSDLPTIEECVRVLRLSPAYFNDLLEYETGK
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
SYKEYLQFKRFEIAKEWLINTDKTLSQIAQELGFRNPQYFSRLFKKITGCLPNDFKMPN
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GDKVLKIGSVHQCNCCMGSKTLHPLVSVIDLSKADLSSHTDFKFGFYTILLSECKCEAY
CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
RYGHQYYDFSDGTLLCLTPGESISMKDSDNTRPSKGWILAFHPDLICGTALGANIRDYTF
HHCCCEEECCCCEEEEECCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEE
FSYRPEEALHVSLREKQVILELLDKINEELQRCIDCYSQKIISKYIELLLDYCERFYERQ
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FITRNEANKKIIERFDRLLDDHFNTIQSQSSDLPTIEECVRVLRLSPAYFNDLLEYETGK
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
SYKEYLQFKRFEIAKEWLINTDKTLSQIAQELGFRNPQYFSRLFKKITGCLPNDFKMPN
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]