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The map label for this gene is ccpA [H]

Identifier: 29345897

GI number: 29345897

Start: 603200

End: 604264

Strand: Reverse

Name: ccpA [H]

Synonym: BT_0487

Alternate gene names: 29345897

Gene position: 604264-603200 (Counterclockwise)

Preceding gene: 29345900

Following gene: 29345896

Centisome position: 9.65

GC content: 45.54

Gene sequence:

>1065_bases
ATGAATAAATTGCCCGAAAGAATCAGAATCAAAGACATCGCCCGTTTAGCAGACGTGTCTGTAGGAACAGTAGACCGCGT
CATTCACGGACGCAGCGGAGTATCAGAAGCAAGCAAAAAACGGGTGGAAGAAATTCTGAAGCAGCTTGACTATCAACCTA
ACATGTATGCCAGTGCCCTGGCTTCCAACAAGAAGTACACATTCATCTGTCTTCTGCCTCAACATCTGGAAGGCGAATAC
TGGACAGCAGTAGAACTGGGTATCCACGAAGCTATCGCGACCTACTCGGACTTCAATACCTCGGTAAAGATCAACTATTA
CGATCCATACGACTATCATTCGTTTGTAGACGCCAGCGAAGCTATCCTGACTCAGCAACCGGACGGAGTGATGGTGGCCC
CTACGGCTCCGCAATATACGAAAGGCTTTACTGATCAGTTGCAAACGTTGGATATACCTTATATATATATAGACTCAAAT
ATCAAAGACGTACCTCCCCTCGCCTTCTTCGGTCAGAACTCACGCCAAAGCGGATACTTTGCCGCCCGTATGCTAATGCT
GCTTGCCAGAGACGAAAAGGAAATCGTTATTTTCCGTAAGATACATGAAGGAATTGTCGGTTCTAACCAGCAAGAGAACA
GGGAAATCGGATTCAGGCAGTACATGGAGGAACATCATCCGTCTTGTACTATACTGGAGCTTGACTTGCATGCCGAACGC
AATGATGAAGATAACGAAATGCTGGATGAATTCTTCCGTTCTCACCCGAACGTAAAGAATGGAATCACTTTCAATTCAAA
AGTCTACATTATCGGCGAATACCTGCAAAGTCGCGGAAAGAAAAATTTCAATCTGATAGGCTACGACCTTCTGGAACGGA
ATGTCACTTGCCTGAAAGAAGGAAGCGTTTCCTTCCTCATCGCCCAGCAACCGGAACTGCAAGGCCTCAACGGCATCAAG
GCGCTCTGCGATCACCTCATTTTCAAGAAAGACGTGACTTGCATCAACTATATGCCGATTGACTTGTTGACTGTAGAAAC
AATAGACTATTACCATAGCAAATAA

Upstream 100 bases:

>100_bases
ACAATTTTCGTAATTACAAAAATTGTTATATATTTGTATCGAAAATATTAAGATTATTATTGTGTGCGAGCACATAAACC
TATATAAATAAGGTGATCGT

Downstream 100 bases:

>100_bases
CAACAAAATCCAACTAAACAAGTACATGGAAACAAAGTATTTAAGAATTAATCCTGCCGACAACGTTGCCGTTGCCATTG
TTAACCTCCCGGCAGGAGAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MNKLPERIRIKDIARLADVSVGTVDRVIHGRSGVSEASKKRVEEILKQLDYQPNMYASALASNKKYTFICLLPQHLEGEY
WTAVELGIHEAIATYSDFNTSVKINYYDPYDYHSFVDASEAILTQQPDGVMVAPTAPQYTKGFTDQLQTLDIPYIYIDSN
IKDVPPLAFFGQNSRQSGYFAARMLMLLARDEKEIVIFRKIHEGIVGSNQQENREIGFRQYMEEHHPSCTILELDLHAER
NDEDNEMLDEFFRSHPNVKNGITFNSKVYIIGEYLQSRGKKNFNLIGYDLLERNVTCLKEGSVSFLIAQQPELQGLNGIK
ALCDHLIFKKDVTCINYMPIDLLTVETIDYYHSK

Sequences:

>Translated_354_residues
MNKLPERIRIKDIARLADVSVGTVDRVIHGRSGVSEASKKRVEEILKQLDYQPNMYASALASNKKYTFICLLPQHLEGEY
WTAVELGIHEAIATYSDFNTSVKINYYDPYDYHSFVDASEAILTQQPDGVMVAPTAPQYTKGFTDQLQTLDIPYIYIDSN
IKDVPPLAFFGQNSRQSGYFAARMLMLLARDEKEIVIFRKIHEGIVGSNQQENREIGFRQYMEEHHPSCTILELDLHAER
NDEDNEMLDEFFRSHPNVKNGITFNSKVYIIGEYLQSRGKKNFNLIGYDLLERNVTCLKEGSVSFLIAQQPELQGLNGIK
ALCDHLIFKKDVTCINYMPIDLLTVETIDYYHSK
>Mature_354_residues
MNKLPERIRIKDIARLADVSVGTVDRVIHGRSGVSEASKKRVEEILKQLDYQPNMYASALASNKKYTFICLLPQHLEGEY
WTAVELGIHEAIATYSDFNTSVKINYYDPYDYHSFVDASEAILTQQPDGVMVAPTAPQYTKGFTDQLQTLDIPYIYIDSN
IKDVPPLAFFGQNSRQSGYFAARMLMLLARDEKEIVIFRKIHEGIVGSNQQENREIGFRQYMEEHHPSCTILELDLHAER
NDEDNEMLDEFFRSHPNVKNGITFNSKVYIIGEYLQSRGKKNFNLIGYDLLERNVTCLKEGSVSFLIAQQPELQGLNGIK
ALCDHLIFKKDVTCINYMPIDLLTVETIDYYHSK

Specific function: Transcriptional regulator involved in both the repression of carbohydrate utilization genes and in the positive regulation of genes involved in excretion of excess carbon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006377
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 40601; Mature: 40601

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLPERIRIKDIARLADVSVGTVDRVIHGRSGVSEASKKRVEEILKQLDYQPNMYASAL
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
ASNKKYTFICLLPQHLEGEYWTAVELGIHEAIATYSDFNTSVKINYYDPYDYHSFVDASE
HCCCCEEEEEEEHHHCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHCHHH
AILTQQPDGVMVAPTAPQYTKGFTDQLQTLDIPYIYIDSNIKDVPPLAFFGQNSRQSGYF
HHHCCCCCCEEEECCCCHHHCCHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCHHH
AARMLMLLARDEKEIVIFRKIHEGIVGSNQQENREIGFRQYMEEHHPSCTILELDLHAER
HHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCC
NDEDNEMLDEFFRSHPNVKNGITFNSKVYIIGEYLQSRGKKNFNLIGYDLLERNVTCLKE
CCCHHHHHHHHHHHCCCCCCCEEECCEEEEEEHHHHHCCCCCCEEEEHHHHHCCCEEEEC
GSVSFLIAQQPELQGLNGIKALCDHLIFKKDVTCINYMPIDLLTVETIDYYHSK
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEHHHHCCC
>Mature Secondary Structure
MNKLPERIRIKDIARLADVSVGTVDRVIHGRSGVSEASKKRVEEILKQLDYQPNMYASAL
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
ASNKKYTFICLLPQHLEGEYWTAVELGIHEAIATYSDFNTSVKINYYDPYDYHSFVDASE
HCCCCEEEEEEEHHHCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHCHHH
AILTQQPDGVMVAPTAPQYTKGFTDQLQTLDIPYIYIDSNIKDVPPLAFFGQNSRQSGYF
HHHCCCCCCEEEECCCCHHHCCHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCHHH
AARMLMLLARDEKEIVIFRKIHEGIVGSNQQENREIGFRQYMEEHHPSCTILELDLHAER
HHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCC
NDEDNEMLDEFFRSHPNVKNGITFNSKVYIIGEYLQSRGKKNFNLIGYDLLERNVTCLKE
CCCHHHHHHHHHHHCCCCCCCEEECCEEEEEEHHHHHCCCCCCEEEEHHHHHCCCEEEEC
GSVSFLIAQQPELQGLNGIKALCDHLIFKKDVTCINYMPIDLLTVETIDYYHSK
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA