Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 29345736

GI number: 29345736

Start: 391486

End: 392007

Strand: Reverse

Name: rpoE [C]

Synonym: BT_0326

Alternate gene names: 29345736

Gene position: 392007-391486 (Counterclockwise)

Preceding gene: 29345737

Following gene: 29345735

Centisome position: 6.26

GC content: 50.19

Gene sequence:

>522_bases
ATGGAACTGAAACAATTTAAAATAACCGTTGTACCCCTTCGAGACAAGCTGCTGAACTACGCCCGAAGGATGACAGATGA
TCCTTCGGATGCGGAAGATGCCGTACAGGAAGTCATGCTGAAGCTGTGGAATCTGCGCCAGAAGCTAGACGAGTACAGAA
GTATCGAAGCCGTAGCCATGACCATGACGCATCATCTCTGCATGGATATGTGGCGTGCCAAACGACCGGACACTCTATCA
CTCGACCGTGTACAGGCTCCCACCCCTTCGGCTACTCCGGAGCGACTGCTGGAAGAGAAAGATGAGTTCAGATTGATGCG
GGAAATTATCGACTCCCTGCCTACGCTGCAACGAACGATTATTCGCATGAAAGACATCGAAGAGTACGAGACGGAAGAGA
TTGCCGAAATCACCGGCTGCAACGCAGAAGCCATCCGCAGTAATCTGTCGAGGGCCCGCAAGAAAGTAAGGGAAGTCTAT
TTGCAAACGATACAAGAACGAAAAAGGAGGAACAAAGCATGA

Upstream 100 bases:

>100_bases
CAATCAATAAAGTTGCTCTTGACAAAAATTTGCTCTACTTTTGAAAAAAATTCCCTTTTCGATGTCACGTTTTTAATCCG
CCACCGTCTTATCAGTGTAA

Downstream 100 bases:

>100_bases
AAGATATAGAAACCTTGCTAAACAAATATTTCGAAGGAGAAACCACCTGCGAGGAAGAGCGCAGACTACGACGTTTCTTT
GCCGAAGGGCTCGTACCGGA

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MELKQFKITVVPLRDKLLNYARRMTDDPSDAEDAVQEVMLKLWNLRQKLDEYRSIEAVAMTMTHHLCMDMWRAKRPDTLS
LDRVQAPTPSATPERLLEEKDEFRLMREIIDSLPTLQRTIIRMKDIEEYETEEIAEITGCNAEAIRSNLSRARKKVREVY
LQTIQERKRRNKA

Sequences:

>Translated_173_residues
MELKQFKITVVPLRDKLLNYARRMTDDPSDAEDAVQEVMLKLWNLRQKLDEYRSIEAVAMTMTHHLCMDMWRAKRPDTLS
LDRVQAPTPSATPERLLEEKDEFRLMREIIDSLPTLQRTIIRMKDIEEYETEEIAEITGCNAEAIRSNLSRARKKVREVY
LQTIQERKRRNKA
>Mature_173_residues
MELKQFKITVVPLRDKLLNYARRMTDDPSDAEDAVQEVMLKLWNLRQKLDEYRSIEAVAMTMTHHLCMDMWRAKRPDTLS
LDRVQAPTPSATPERLLEEKDEFRLMREIIDSLPTLQRTIIRMKDIEEYETEEIAEITGCNAEAIRSNLSRARKKVREVY
LQTIQERKRRNKA

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20521; Mature: 20521

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKQFKITVVPLRDKLLNYARRMTDDPSDAEDAVQEVMLKLWNLRQKLDEYRSIEAVAM
CCCCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMTHHLCMDMWRAKRPDTLSLDRVQAPTPSATPERLLEEKDEFRLMREIIDSLPTLQRTI
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRMKDIEEYETEEIAEITGCNAEAIRSNLSRARKKVREVYLQTIQERKRRNKA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELKQFKITVVPLRDKLLNYARRMTDDPSDAEDAVQEVMLKLWNLRQKLDEYRSIEAVAM
CCCCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMTHHLCMDMWRAKRPDTLSLDRVQAPTPSATPERLLEEKDEFRLMREIIDSLPTLQRTI
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRMKDIEEYETEEIAEITGCNAEAIRSNLSRARKKVREVYLQTIQERKRRNKA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA