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The map label for this gene is traC [H]

Identifier: 29345503

GI number: 29345503

Start: 85435

End: 87939

Strand: Reverse

Name: traC [H]

Synonym: BT_0093

Alternate gene names: 29345503

Gene position: 87939-85435 (Counterclockwise)

Preceding gene: 29345504

Following gene: 29345502

Centisome position: 1.4

GC content: 43.79

Gene sequence:

>2505_bases
ATGAGAAATATATTAAAAGCTACTACGCTGGAAAACAAGTTTCCACTGTTCACGGTGGAAAACGGGTGCATCGTTTCCAA
AGACGCCGACATAACGGTGGCGTTCCGGGTGGAACTGCCGGAACTGTTCACCGTCACGGCAGCCGAATACGAAGCGATAC
ATTCCGCTTGGAACAAGGCGGTAAAGGTGCTGCCCGATTACAGCATCGTTCATAAACAGGACTGGTTCATCAAAGAAAAC
TATGCGCCTGACATCCAAAAGGATGATTTGAGTTTCCTTTCCCGTTCCTTTGAACGGCATTTTAATGAAAGACCGTTCTT
AAACCATACCTGCTATTTGTTTCTGACGAAAACGACAAAGGAACGTAGCCGGATGCAGAGTAATTTTTCTACTCTTTGCC
GGGGCTTCCTTGTCCCCAAAGAGATAAAGGACAAGGAAACGGTTACAAAGTTCCTCGAAGCGGTGGGGCAGTTTGAAAGC
ATTATGAATGATAGCGGTTTCATTACCCTTACCCGCCTGACTTCGGACGAAATCACCGGGACAAAGGAAACGGCGGGTAT
CGTGGAAAAATACTTTTCACTCTCACAAACAGACACTACCACATTGAAAGATATTCAACTGAACGCCGGAGATATGCGTA
TAGGTGACGATATTCTTTGTTTGCATACTCTTTCGGATGCGGAAGATATGCCGGGCAAGGTGGGAACTGATACCCGCTAT
GAAAAGCTATCCACCGACCGGAGCGATTGCAGATTATCTTTTGCTTCTCCGGTGGGCGTGTTGCTCTCCTGTAACCATAT
CTATAACCAGTACATCTTCATTGACGACCATACGGAGAACCTGAAACAGTTTGAAAAGATGGCTCGCAATATGCACTCCC
TTTCCAAATACAGCCGTGCCAATCAGATTAACAAGTCTTGGATAGAGGAATATTTGAACGAAGCACATTCACAGGGGCTT
ATCTCCGTGCGATGCCATTGTAATATCATGGCATGGAGTGACGACCGGGACGAACTCAAACACATTAAAAATGATGTGGG
GTCACAGCTCGCACTTATGGAGTGCAAGCCACGTCATAACACCACCGACACACCGACCTTGTTTTGGGCGGGCATACCCG
GCAATCAGGCGGACTTCCCGGCGGAAGAAAGTTTCTACACCTTTATTGAACAGGCTCTTTGCCTATTCACCGAAGAAACG
AACTACAAAAGTTCGCTTTCTCCCTTTGGTATCAAGATGGTGGATAGGGTCACAGGAAAGCCGTTGCACATTGATATTTC
AGACCTGCCAATGAAAAAAGGTATCATTACCAATCGCAACAAGTTCATACTTGGACCGAGTGGTAGCGGCAAATCATTCT
TCACCAATCACATGGTGCGCCAGTATTACGAACAAAATGCGCACGTCCTGCTGGTTGATACCGGAAACAGTTACTTAGGA
TTGTGTGAAATGATAAACCGGAAAACGCACGGGGAAGATGGGATTTATTTTACCTATACTACTGAAAACCCGATAGCGTT
TAATCCTTTCTATGTGGAAGATGGGGTATTCGATATTGAAAAGAAAGAGAGTATCAAAACGCTTATCCTGACCCTTTGGA
AAAGGGACGATGAAGCACCCACACGGGCGGAAGAAGTGGCTTTGTCAAACGCCGTAAGTTCCTATATCGAACTGATTACT
AAGGATAGTTCGGTTACTCCCTGCTTCAATACATTCTATGAATATGTGAAAAATGACTACCGGGCGCACCTGCAAGAAAA
GAACGTCCGGGAAAAGGATTTCGATATAGACAACTTCCTGAATGTATTAGAACCTTACTACAAAGGGGGCGAATATGATT
ACCTGCTGAACTCCGACAAGGAGCTTGATTTGCTGCATAAACGCTTCATTGTCTTTGAGTTGGATAATATCAAAGACCAC
AAAATTTTATTCCCGATTACTACGATTATCATCATGGAAGTATTTATTTCCAAAATGCGTAAACTAAAGGGTATCAGGAA
ATTAATATTGATAGAAGAAGCGTGGAAAGCGATTGCATCGGCGAATATGGCGGATTACATAAAATATTTATACAAAACCG
TTAGAAAGTATTTCGGCGAAGCGATTGTAGTTACCCAAGAGGTCGAAGATATTATTTCCTCGCCCATTGTAAAAGAGAGT
ATTATAAACAATTCTGATTGTAAGATACTGCTCGACCAAAGGAAATACCTTAATAAATTCGATAGCATACAGAACCTTTT
GGGACTGACCGATAAGGAACGTTCACAGATGCTTTCCATCAACCTTGCCAATCATCCGAACCGGAAATACAAGGAAGTTT
GGATAGGCTTAGGCGGTACACAATCAGCCGTATATGCTACCGAAGTGAGTTTGGAAGAATATTTTACATACACCACCGAA
GAAACGGAAAAGATGGAACTATTCGCCTTGTCCGAAAAGTTGGGCGGTAATCTCGAACTTGCTATCAAACGGCTTGCCGA
AAGCAAGCGCAATCCCGAAAAATAA

Upstream 100 bases:

>100_bases
CACACGGGTTAATGAAATTGTCCGCACGCAAAAGCCACCCTTTCCATATCATCAACCGAAAAGCCATATCCCGATTATTC
CATTTAAAACAAGCATCGAA

Downstream 100 bases:

>100_bases
TCAATTAACAATTTAAAATTCATTCAGTATGAAACATTTAAAATTCTTGTTTCCGGTGCTGTTATGCACCTTGTTACTGG
GGCTTTCTTCCTGTAAGGAA

Product: conjugate transposon protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 834; Mature: 834

Protein sequence:

>834_residues
MRNILKATTLENKFPLFTVENGCIVSKDADITVAFRVELPELFTVTAAEYEAIHSAWNKAVKVLPDYSIVHKQDWFIKEN
YAPDIQKDDLSFLSRSFERHFNERPFLNHTCYLFLTKTTKERSRMQSNFSTLCRGFLVPKEIKDKETVTKFLEAVGQFES
IMNDSGFITLTRLTSDEITGTKETAGIVEKYFSLSQTDTTTLKDIQLNAGDMRIGDDILCLHTLSDAEDMPGKVGTDTRY
EKLSTDRSDCRLSFASPVGVLLSCNHIYNQYIFIDDHTENLKQFEKMARNMHSLSKYSRANQINKSWIEEYLNEAHSQGL
ISVRCHCNIMAWSDDRDELKHIKNDVGSQLALMECKPRHNTTDTPTLFWAGIPGNQADFPAEESFYTFIEQALCLFTEET
NYKSSLSPFGIKMVDRVTGKPLHIDISDLPMKKGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQNAHVLLVDTGNSYLG
LCEMINRKTHGEDGIYFTYTTENPIAFNPFYVEDGVFDIEKKESIKTLILTLWKRDDEAPTRAEEVALSNAVSSYIELIT
KDSSVTPCFNTFYEYVKNDYRAHLQEKNVREKDFDIDNFLNVLEPYYKGGEYDYLLNSDKELDLLHKRFIVFELDNIKDH
KILFPITTIIIMEVFISKMRKLKGIRKLILIEEAWKAIASANMADYIKYLYKTVRKYFGEAIVVTQEVEDIISSPIVKES
IINNSDCKILLDQRKYLNKFDSIQNLLGLTDKERSQMLSINLANHPNRKYKEVWIGLGGTQSAVYATEVSLEEYFTYTTE
ETEKMELFALSEKLGGNLELAIKRLAESKRNPEK

Sequences:

>Translated_834_residues
MRNILKATTLENKFPLFTVENGCIVSKDADITVAFRVELPELFTVTAAEYEAIHSAWNKAVKVLPDYSIVHKQDWFIKEN
YAPDIQKDDLSFLSRSFERHFNERPFLNHTCYLFLTKTTKERSRMQSNFSTLCRGFLVPKEIKDKETVTKFLEAVGQFES
IMNDSGFITLTRLTSDEITGTKETAGIVEKYFSLSQTDTTTLKDIQLNAGDMRIGDDILCLHTLSDAEDMPGKVGTDTRY
EKLSTDRSDCRLSFASPVGVLLSCNHIYNQYIFIDDHTENLKQFEKMARNMHSLSKYSRANQINKSWIEEYLNEAHSQGL
ISVRCHCNIMAWSDDRDELKHIKNDVGSQLALMECKPRHNTTDTPTLFWAGIPGNQADFPAEESFYTFIEQALCLFTEET
NYKSSLSPFGIKMVDRVTGKPLHIDISDLPMKKGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQNAHVLLVDTGNSYLG
LCEMINRKTHGEDGIYFTYTTENPIAFNPFYVEDGVFDIEKKESIKTLILTLWKRDDEAPTRAEEVALSNAVSSYIELIT
KDSSVTPCFNTFYEYVKNDYRAHLQEKNVREKDFDIDNFLNVLEPYYKGGEYDYLLNSDKELDLLHKRFIVFELDNIKDH
KILFPITTIIIMEVFISKMRKLKGIRKLILIEEAWKAIASANMADYIKYLYKTVRKYFGEAIVVTQEVEDIISSPIVKES
IINNSDCKILLDQRKYLNKFDSIQNLLGLTDKERSQMLSINLANHPNRKYKEVWIGLGGTQSAVYATEVSLEEYFTYTTE
ETEKMELFALSEKLGGNLELAIKRLAESKRNPEK
>Mature_834_residues
MRNILKATTLENKFPLFTVENGCIVSKDADITVAFRVELPELFTVTAAEYEAIHSAWNKAVKVLPDYSIVHKQDWFIKEN
YAPDIQKDDLSFLSRSFERHFNERPFLNHTCYLFLTKTTKERSRMQSNFSTLCRGFLVPKEIKDKETVTKFLEAVGQFES
IMNDSGFITLTRLTSDEITGTKETAGIVEKYFSLSQTDTTTLKDIQLNAGDMRIGDDILCLHTLSDAEDMPGKVGTDTRY
EKLSTDRSDCRLSFASPVGVLLSCNHIYNQYIFIDDHTENLKQFEKMARNMHSLSKYSRANQINKSWIEEYLNEAHSQGL
ISVRCHCNIMAWSDDRDELKHIKNDVGSQLALMECKPRHNTTDTPTLFWAGIPGNQADFPAEESFYTFIEQALCLFTEET
NYKSSLSPFGIKMVDRVTGKPLHIDISDLPMKKGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQNAHVLLVDTGNSYLG
LCEMINRKTHGEDGIYFTYTTENPIAFNPFYVEDGVFDIEKKESIKTLILTLWKRDDEAPTRAEEVALSNAVSSYIELIT
KDSSVTPCFNTFYEYVKNDYRAHLQEKNVREKDFDIDNFLNVLEPYYKGGEYDYLLNSDKELDLLHKRFIVFELDNIKDH
KILFPITTIIIMEVFISKMRKLKGIRKLILIEEAWKAIASANMADYIKYLYKTVRKYFGEAIVVTQEVEDIISSPIVKES
IINNSDCKILLDQRKYLNKFDSIQNLLGLTDKERSQMLSINLANHPNRKYKEVWIGLGGTQSAVYATEVSLEEYFTYTTE
ETEKMELFALSEKLGGNLELAIKRLAESKRNPEK

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 96015; Mature: 96015

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNILKATTLENKFPLFTVENGCIVSKDADITVAFRVELPELFTVTAAEYEAIHSAWNKA
CCCCHHHHCCCCCCCEEEECCCEEEECCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHH
VKVLPDYSIVHKQDWFIKENYAPDIQKDDLSFLSRSFERHFNERPFLNHTCYLFLTKTTK
HHHCCCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHH
ERSRMQSNFSTLCRGFLVPKEIKDKETVTKFLEAVGQFESIMNDSGFITLTRLTSDEITG
HHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
TKETAGIVEKYFSLSQTDTTTLKDIQLNAGDMRIGDDILCLHTLSDAEDMPGKVGTDTRY
CHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEECCCEEEEEECCCCCCCCCCCCCCCHH
EKLSTDRSDCRLSFASPVGVLLSCNHIYNQYIFIDDHTENLKQFEKMARNMHSLSKYSRA
HHHCCCCHHCEEEECCCCCCEEEEHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
NQINKSWIEEYLNEAHSQGLISVRCHCNIMAWSDDRDELKHIKNDVGSQLALMECKPRHN
HHCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCC
TTDTPTLFWAGIPGNQADFPAEESFYTFIEQALCLFTEETNYKSSLSPFGIKMVDRVTGK
CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCC
PLHIDISDLPMKKGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQNAHVLLVDTGNSYLG
EEEEEHHCCCCCCCEEECCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHH
LCEMINRKTHGEDGIYFTYTTENPIAFNPFYVEDGVFDIEKKESIKTLILTLWKRDDEAP
HHHHHCCCCCCCCCEEEEEECCCCEEECCEEECCCEECCCHHHHHHHHHHHHHCCCCCCC
TRAEEVALSNAVSSYIELITKDSSVTPCFNTFYEYVKNDYRAHLQEKNVREKDFDIDNFL
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
NVLEPYYKGGEYDYLLNSDKELDLLHKRFIVFELDNIKDHKILFPITTIIIMEVFISKMR
HHHHHHHCCCCEEEEECCCCHHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHH
KLKGIRKLILIEEAWKAIASANMADYIKYLYKTVRKYFGEAIVVTQEVEDIISSPIVKES
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCHHHHH
IINNSDCKILLDQRKYLNKFDSIQNLLGLTDKERSQMLSINLANHPNRKYKEVWIGLGGT
HCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCEEEEEEECCCC
QSAVYATEVSLEEYFTYTTEETEKMELFALSEKLGGNLELAIKRLAESKRNPEK
CCEEEEEEEEHHHHHEECCCCCHHHHHEEEHHHHCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRNILKATTLENKFPLFTVENGCIVSKDADITVAFRVELPELFTVTAAEYEAIHSAWNKA
CCCCHHHHCCCCCCCEEEECCCEEEECCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHH
VKVLPDYSIVHKQDWFIKENYAPDIQKDDLSFLSRSFERHFNERPFLNHTCYLFLTKTTK
HHHCCCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHH
ERSRMQSNFSTLCRGFLVPKEIKDKETVTKFLEAVGQFESIMNDSGFITLTRLTSDEITG
HHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
TKETAGIVEKYFSLSQTDTTTLKDIQLNAGDMRIGDDILCLHTLSDAEDMPGKVGTDTRY
CHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEECCCEEEEEECCCCCCCCCCCCCCCHH
EKLSTDRSDCRLSFASPVGVLLSCNHIYNQYIFIDDHTENLKQFEKMARNMHSLSKYSRA
HHHCCCCHHCEEEECCCCCCEEEEHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
NQINKSWIEEYLNEAHSQGLISVRCHCNIMAWSDDRDELKHIKNDVGSQLALMECKPRHN
HHCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCC
TTDTPTLFWAGIPGNQADFPAEESFYTFIEQALCLFTEETNYKSSLSPFGIKMVDRVTGK
CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCC
PLHIDISDLPMKKGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQNAHVLLVDTGNSYLG
EEEEEHHCCCCCCCEEECCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHH
LCEMINRKTHGEDGIYFTYTTENPIAFNPFYVEDGVFDIEKKESIKTLILTLWKRDDEAP
HHHHHCCCCCCCCCEEEEEECCCCEEECCEEECCCEECCCHHHHHHHHHHHHHCCCCCCC
TRAEEVALSNAVSSYIELITKDSSVTPCFNTFYEYVKNDYRAHLQEKNVREKDFDIDNFL
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
NVLEPYYKGGEYDYLLNSDKELDLLHKRFIVFELDNIKDHKILFPITTIIIMEVFISKMR
HHHHHHHCCCCEEEEECCCCHHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHH
KLKGIRKLILIEEAWKAIASANMADYIKYLYKTVRKYFGEAIVVTQEVEDIISSPIVKES
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCHHHHH
IINNSDCKILLDQRKYLNKFDSIQNLLGLTDKERSQMLSINLANHPNRKYKEVWIGLGGT
HCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCEEEEEEECCCC
QSAVYATEVSLEEYFTYTTEETEKMELFALSEKLGGNLELAIKRLAESKRNPEK
CCEEEEEEEEHHHHHEECCCCCHHHHHEEEHHHHCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]