Click here to switch to the map view.

The map label for this gene is yjjV [H]

Identifier: 29144837

GI number: 29144837

Start: 4757469

End: 4758242

Strand: Direct

Name: yjjV [H]

Synonym: t4607

Alternate gene names: 29144837

Gene position: 4757469-4758242 (Clockwise)

Preceding gene: 29144836

Following gene: 29144840

Centisome position: 99.28

GC content: 59.17

Gene sequence:

>774_bases
GTGAGCTGGCGCTTTATCGATACGCATTGCCATTTTGATTTCCCGCCCTTTACGGGCGATGAGCGCGCCAGTATTCAGCG
TGCCTGTGAGGCGGGCGTTGAAAAAATCATCGTGCCGGCGACCGAGGCGGCTCACTTTCCCCGCGTGCTGGCGCTGGCGG
CGCGTTTCCCGTCGCTTTATGCTGCGCTGGGATTGCACCCCATTGTGATTGAGCGTCATGCCGATGACGATCCTGATAAG
CTGCAACAAGCGCTGGCGCAACAACAGAACGTCGTGGCGGTAGGCGAGATCGGTCTCGATCTTTATCGCGACGATCCGCA
GTTCGCCAGGCAAGAGCGATTTTTAGACGCGCAACTGCAACTGGCAAAACGCTACGATCTGCCGGTGATCCTGCACTCGC
GGCGCACGCATGACAAACTGGCGATGCGCTTAAAGCGCCAGAGTTTGCCGCAAACCGGTGTGGTGCATGGTTTTTCCGGC
AGTCTGCAACAGGCCGAACGTTTTGTGCAACTGGGCTATAAAATCGGCGTCGGCGGCACCATCACCTACCCGCGCGCCAG
TAAAACCCGTGATGTTATGGCGCGGTTGCCGCTGGACGCGCTGTTGCTGGAGACCGATGCGCCGGATATGCCGCTAAAGG
GGTTTCAGGGGCAGCCGAACCGCCCGGAGCAGGCGGCGCGCGTATTTGATGCGCTCTGCGAATTACGTCCGGAGCCCGCA
GAGGTGATAGCCGATACGCTGTATCGCAATACCGTTACCTTGTTTCGGCTCTGA

Upstream 100 bases:

>100_bases
TGGTCGTGCCTCCGGCACCGGTGGCCAATGATACGCATGTGGCGGAGGTCATTAGCGCGCCGCAGGCAAACGACACCACA
TTTACCGACGAGGATCTGGC

Downstream 100 bases:

>100_bases
TGGCATCGCAGCCGCCGTCCGGCAGGCGACGCTTACAAATATAGCGCCGGCAAAATCAGCTTCGCCACCCCACGCGCGCG
CAATCCGTCAGCCAGCCGTT

Product: deoxyribonuclease YjjV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVLALAARFPSLYAALGLHPIVIERHADDDPDK
LQQALAQQQNVVAVGEIGLDLYRDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMRLKRQSLPQTGVVHGFSG
SLQQAERFVQLGYKIGVGGTITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPA
EVIADTLYRNTVTLFRL

Sequences:

>Translated_257_residues
MSWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVLALAARFPSLYAALGLHPIVIERHADDDPDK
LQQALAQQQNVVAVGEIGLDLYRDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMRLKRQSLPQTGVVHGFSG
SLQQAERFVQLGYKIGVGGTITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPA
EVIADTLYRNTVTLFRL
>Mature_256_residues
SWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVLALAARFPSLYAALGLHPIVIERHADDDPDKL
QQALAQQQNVVAVGEIGLDLYRDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMRLKRQSLPQTGVVHGFSGS
LQQAERFVQLGYKIGVGGTITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPAE
VIADTLYRNTVTLFRL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=294, Percent_Identity=26.8707482993197, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI225903439, Length=237, Percent_Identity=27.4261603375527, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=27.3408239700375, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=27.2058823529412, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=27.3408239700375, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI226061614, Length=260, Percent_Identity=25.7692307692308, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI225903424, Length=219, Percent_Identity=27.8538812785388, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=29.2035398230088, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=76.3565891472868, Blast_Score=394, Evalue=1e-111,
Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=27.027027027027, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI48994985, Length=253, Percent_Identity=29.2490118577075, Blast_Score=98, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17559024, Length=218, Percent_Identity=30.7339449541284, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=245, Percent_Identity=26.530612244898, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI221330018, Length=302, Percent_Identity=27.8145695364238, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24586117, Length=268, Percent_Identity=28.7313432835821, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24648690, Length=211, Percent_Identity=29.8578199052133, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28903; Mature: 28772

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVLALAARFPSLY
CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHEEEECCHHHHHHHHHHHHHHHHHHHH
AALGLHPIVIERHADDDPDKLQQALAQQQNVVAVGEIGLDLYRDDPQFARQERFLDAQLQ
HHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LAKRYDLPVILHSRRTHDKLAMRLKRQSLPQTGVVHGFSGSLQQAERFVQLGYKIGVGGT
HHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCEECCCCE
ITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPA
EECCCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
EVIADTLYRNTVTLFRL
HHHHHHHHHCCEEEEEC
>Mature Secondary Structure 
SWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVLALAARFPSLY
CCEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHEEEECCHHHHHHHHHHHHHHHHHHHH
AALGLHPIVIERHADDDPDKLQQALAQQQNVVAVGEIGLDLYRDDPQFARQERFLDAQLQ
HHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LAKRYDLPVILHSRRTHDKLAMRLKRQSLPQTGVVHGFSGSLQQAERFVQLGYKIGVGGT
HHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCEECCCCE
ITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPA
EECCCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
EVIADTLYRNTVTLFRL
HHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]