Click here to switch to the map view.

The map label for this gene is qseD [H]

Identifier: 29144797

GI number: 29144797

Start: 4712004

End: 4712912

Strand: Reverse

Name: qseD [H]

Synonym: t4561

Alternate gene names: 29144797

Gene position: 4712912-4712004 (Counterclockwise)

Preceding gene: 29144798

Following gene: 29144793

Centisome position: 98.35

GC content: 52.48

Gene sequence:

>909_bases
ATGGATGTAACTGGAGCAGGTTTGCACAATATTGAGACAAAATGGCTATATGATTTTCTGACGCTGGAAAAGTGCCGCAA
TTTCTCTCAGGCCGCCATTATCCGCAACGTATCGCAACCCGCTTTTAGCCGGCGGATTCGCGCCCTGGAACATGCCGTGG
GCGTTGAACTGTTTAACCGACAGGTCTCGCCGCTACAGCTTTCCGAACAGGGTAAAATCTTTCACTCCCAGGTTCGCCAC
CTGTTACAGCAGCTGGAAAGTAATCTGACCGAACTGCGCGGCGGCAGCGATTATACGCTGCGTAAAATCAAGATTGCCGC
CGCCCACTCGCTCTCCCTCGGCCTGTTACCGACCATCGTTAAGCAGATGCCGACGCAGTTTACCTACGCCGTTGAGGCGA
TAGATGTCGACCAGGCGGTGGATATGTTACGTGAGGGGCAAAGCGATTTTATCTTTTCCTATCACGATGAAAACCTGCAA
CAAGCGCCGTTTGATAATATCCGCCTGTTTGAGTCGAGACTGTTTCCGGTTTGCGCCAACAATGGCCGGGGCGAGCCGCG
CTATACGCTTGAGCAGCCGCACTTTCCCCTGCTTAATTACAGTCAAAACTCCTATATGGGCCGGCTGATAAATCGTACCC
TGACTCGCCATGCTGAACTGAGTTTCAGTACATTTTTCGTCTCTTCGATGAGTGAATTGTTAAAACAGGTTGCGATGGAC
GGCTGCGGAATCGCCTGGTTACCCGAGTATGCTATCCGTCAGGAGATTACCGACGGGCGCCTGATAGTGCTTGATGCCGA
CGAACTGGTTATCCCGATCCAGGCTTATGCTTATCGCATGAATACCCGCATGAGTCAGGTAGCCGAAACATTTTGGCGCG
ACCTGCGTGGGCTTCAGGCCGCGCTGTAA

Upstream 100 bases:

>100_bases
TGCCCCATCACGGCATTCTGAAAGAGGACGGGATAAGTGGTTGTCAGCCGCCCGAATGGACGTAGAATGCCCCTTCGGAC
GGCTGACAGGATAACGGTAA

Downstream 100 bases:

>100_bases
ACACATCAGGCGGTAAGGCGTTGTTCCCCGGTCAAAGAGGCGCGGGTGTCTGGCCAGGACTCATACCAACGAATCGCCGC
GCGCACCAGCGACGCTGTGG

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDVTGAGLHNIETKWLYDFLTLEKCRNFSQAAIIRNVSQPAFSRRIRALEHAVGVELFNRQVSPLQLSEQGKIFHSQVRH
LLQQLESNLTELRGGSDYTLRKIKIAAAHSLSLGLLPTIVKQMPTQFTYAVEAIDVDQAVDMLREGQSDFIFSYHDENLQ
QAPFDNIRLFESRLFPVCANNGRGEPRYTLEQPHFPLLNYSQNSYMGRLINRTLTRHAELSFSTFFVSSMSELLKQVAMD
GCGIAWLPEYAIRQEITDGRLIVLDADELVIPIQAYAYRMNTRMSQVAETFWRDLRGLQAAL

Sequences:

>Translated_302_residues
MDVTGAGLHNIETKWLYDFLTLEKCRNFSQAAIIRNVSQPAFSRRIRALEHAVGVELFNRQVSPLQLSEQGKIFHSQVRH
LLQQLESNLTELRGGSDYTLRKIKIAAAHSLSLGLLPTIVKQMPTQFTYAVEAIDVDQAVDMLREGQSDFIFSYHDENLQ
QAPFDNIRLFESRLFPVCANNGRGEPRYTLEQPHFPLLNYSQNSYMGRLINRTLTRHAELSFSTFFVSSMSELLKQVAMD
GCGIAWLPEYAIRQEITDGRLIVLDADELVIPIQAYAYRMNTRMSQVAETFWRDLRGLQAAL
>Mature_302_residues
MDVTGAGLHNIETKWLYDFLTLEKCRNFSQAAIIRNVSQPAFSRRIRALEHAVGVELFNRQVSPLQLSEQGKIFHSQVRH
LLQQLESNLTELRGGSDYTLRKIKIAAAHSLSLGLLPTIVKQMPTQFTYAVEAIDVDQAVDMLREGQSDFIFSYHDENLQ
QAPFDNIRLFESRLFPVCANNGRGEPRYTLEQPHFPLLNYSQNSYMGRLINRTLTRHAELSFSTFFVSSMSELLKQVAMD
GCGIAWLPEYAIRQEITDGRLIVLDADELVIPIQAYAYRMNTRMSQVAETFWRDLRGLQAAL

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=302, Percent_Identity=81.7880794701987, Blast_Score=519, Evalue=1e-149,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34533; Mature: 34533

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTGAGLHNIETKWLYDFLTLEKCRNFSQAAIIRNVSQPAFSRRIRALEHAVGVELFNR
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
QVSPLQLSEQGKIFHSQVRHLLQQLESNLTELRGGSDYTLRKIKIAAAHSLSLGLLPTIV
CCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHCCHHHHHHHHH
KQMPTQFTYAVEAIDVDQAVDMLREGQSDFIFSYHDENLQQAPFDNIRLFESRLFPVCAN
HHCCCHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEECC
NGRGEPRYTLEQPHFPLLNYSQNSYMGRLINRTLTRHAELSFSTFFVSSMSELLKQVAMD
CCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCGIAWLPEYAIRQEITDGRLIVLDADELVIPIQAYAYRMNTRMSQVAETFWRDLRGLQA
CCCCCCCCCHHHHHHCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AL
CC
>Mature Secondary Structure
MDVTGAGLHNIETKWLYDFLTLEKCRNFSQAAIIRNVSQPAFSRRIRALEHAVGVELFNR
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
QVSPLQLSEQGKIFHSQVRHLLQQLESNLTELRGGSDYTLRKIKIAAAHSLSLGLLPTIV
CCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHCCHHHHHHHHH
KQMPTQFTYAVEAIDVDQAVDMLREGQSDFIFSYHDENLQQAPFDNIRLFESRLFPVCAN
HHCCCHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEECC
NGRGEPRYTLEQPHFPLLNYSQNSYMGRLINRTLTRHAELSFSTFFVSSMSELLKQVAMD
CCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCGIAWLPEYAIRQEITDGRLIVLDADELVIPIQAYAYRMNTRMSQVAETFWRDLRGLQA
CCCCCCCCCHHHHHHCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]