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The map label for this gene is yhjV [H]

Identifier: 29144164

GI number: 29144164

Start: 4017833

End: 4019131

Strand: Reverse

Name: yhjV [H]

Synonym: t3890

Alternate gene names: 29144164

Gene position: 4019131-4017833 (Counterclockwise)

Preceding gene: 29144166

Following gene: 29144157

Centisome position: 83.87

GC content: 44.03

Gene sequence:

>1299_bases
ATGCAGGACGACACATTACCATTAAATAACAGTAACGCTACGACCACACCGCTTTCAACGAGATTACCGTTTACAAAATA
TGATTTTGGCTGGGTGCTCTTGTGTATCGGTATGGCAATCGGCGCCGGTACCGTCTTAATGCCAGTGCAAATCGGTCTCA
AGGGGATCTGGGTATTTATTACCGCTTTTATCATCGCCTATCCCGCTACCTATATTGTGCAGGATATTTATCTAAAAACG
TTATCTGAAAGCGAAACCTGTGACGATTATACGGATATTATCAGTCACTATCTTGGCAAAAACTGGGGCGTTTTTCTCGG
TGTAATCTATTTTCTTATGATTATCCACGGGGTGTTTATTTACTCCCTGTCGGTGGTGTTTGATAGCGCCTCCTATATCA
AAACCTTCGGCCTTACTGAGGCCGATCTTTCGCAGTCTATTATCTATAAAGTCGCGATTTTCGCCGTGCTGGTGGCGATT
GCCTCCGGCGGGGAAAAGCTATTATTTAAAATTTCCGGCCCGATGGTAGTGGTAAAAGTCGGGATCATTCTGATATTCGG
TTTGGCGATGATCCCACACTGGAATCTTGATAATATTTCCGCCTTTCCCGCCGCATCGGTTTTCTTTCGCGACGTACTGC
TCACTATCCCATTTTGCTTCTTTTCTGCGGTCTTCATTCAGGTGCTAAACCCAATGAACATCGCCTATCGTAAGCGCGAA
CCTGACCGTGTGCTGGCCACCCGGATGGCGATTCGCACGCATCGCATTAGCTATATTACGCTGATTGCCATTATTCTCTT
TTTCTCGTTTTCGTTTACCTTTTCGATTAGTCATGAAGAGGCGGTATCAGCGTTCGAGCAGAATATTTCCGCTCTTGCGC
TGGCAGCTCAGGTAATCCCTGGCCAGATCATCCACATTACCTCTACCATCCTCAATATTTTTGCCGTACTTACCGCGTTC
TTTGGTATTTATTTAGGTTTTCACGAAGCGCTTAAAGGTATTGTACTGAATGTGTTGAGTCGCATTATGGATGTCAAAAA
CATCAACCCACTGTTACTGACATCTGGAATCTGTGTCTTTATCGTGGTTACTCTGGTTATTTGGGTTTCGTTTCGCGTCT
CAGTATTGGTCTTTTTCCAGTTAGGCAGTCCGCTTTATGGCATTGTCGCGTGTATTATTCCCTTTTTCCTGATTTATAAA
GTAGCGCAACTGGAAAAATTACGCGGCCTGAAAACCTGGCTTATTCTGTTATATGGAATATTGTTGTGCCTGTCGCCGTT
ATTAAAATTGATTGAATAA

Upstream 100 bases:

>100_bases
GCTGTCACCGGTTTGCCGCATCGGGTATCAAGGCACTATAGCCTGGTTATAGGCAGCATTCTTTATGAGAGAGCTGCGTA
TATTTTGGGCAGGGGGCTCT

Downstream 100 bases:

>100_bases
GAGCCTATCCCACCAGGCGTTATTGGCACAGCCAGTTTGGACACGGACAGCGCGCAAAAACCGGAGCGTACACGTAGTAC
GTGAGGTTTGACTCGCTACG

Product: amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKT
LSESETCDDYTDIISHYLGKNWGVFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI
ASGGEKLLFKISGPMVVVKVGIILIFGLAMIPHWNLDNISAFPAASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRE
PDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIPGQIIHITSTILNIFAVLTAF
FGIYLGFHEALKGIVLNVLSRIMDVKNINPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACIIPFFLIYK
VAQLEKLRGLKTWLILLYGILLCLSPLLKLIE

Sequences:

>Translated_432_residues
MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKT
LSESETCDDYTDIISHYLGKNWGVFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI
ASGGEKLLFKISGPMVVVKVGIILIFGLAMIPHWNLDNISAFPAASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRE
PDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIPGQIIHITSTILNIFAVLTAF
FGIYLGFHEALKGIVLNVLSRIMDVKNINPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACIIPFFLIYK
VAQLEKLRGLKTWLILLYGILLCLSPLLKLIE
>Mature_432_residues
MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKT
LSESETCDDYTDIISHYLGKNWGVFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI
ASGGEKLLFKISGPMVVVKVGIILIFGLAMIPHWNLDNISAFPAASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRE
PDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIPGQIIHITSTILNIFAVLTAF
FGIYLGFHEALKGIVLNVLSRIMDVKNINPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACIIPFFLIYK
VAQLEKLRGLKTWLILLYGILLCLSPLLKLIE

Specific function: Unknown

COG id: COG0814

COG function: function code E; Amino acid permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid/polyamine transporter 2 family. SdaC/TdcC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789961, Length=432, Percent_Identity=85.4166666666667, Blast_Score=713, Evalue=0.0,
Organism=Escherichia coli, GI145693183, Length=429, Percent_Identity=44.7552447552448, Blast_Score=390, Evalue=1e-110,
Organism=Escherichia coli, GI1789160, Length=412, Percent_Identity=25.4854368932039, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789504, Length=445, Percent_Identity=23.5955056179775, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1789211, Length=417, Percent_Identity=22.5419664268585, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004694
- InterPro:   IPR018227 [H]

Pfam domain/function: PF03222 Trp_Tyr_perm [H]

EC number: NA

Molecular weight: Translated: 48056; Mature: 48056

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHC
>Mature Secondary Structure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HHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]