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The map label for this gene is ybhD [H]

Identifier: 29143979

GI number: 29143979

Start: 3796844

End: 3797752

Strand: Reverse

Name: ybhD [H]

Synonym: t3685

Alternate gene names: 29143979

Gene position: 3797752-3796844 (Counterclockwise)

Preceding gene: 29143980

Following gene: 29143974

Centisome position: 79.25

GC content: 54.24

Gene sequence:

>909_bases
ATGAATTTAACTATCCGGCAATTTCGCGCGTTTCTGGCCGTCGCGGATTTGCGTAGTTTTACCGCCGCCAGCAAATATCT
GTGCATCACGCAGGGAGCTGTTAGCGGTTTAATCAACGAAATGGAAAGCCAGATGGAGGTTTCCCTTTTCGACCGCACTT
CGCGCGTGGTGAAGCTATCGCCCGACGGCGAAAAGTTTTTACCCGCCGCCATGCGGGTTGTTGAAGAGTTTCAACGGGCC
GAAAATTATGCCCGCGACCTGAAAGAGATCAAAAAATCCCTGGTGCGGGTGGTCGGCGCGCCGCTGATCGCCTGTGCTTT
TCTGCCGCAAATCATCCATGCCTTTAAGCGGCAGCATCCGCATACCCACGTACAGCTTATTGATAAGCCCATGTCGCAAT
TACAAAAAAGCATTATGTTGGGAGAAGCCGATTTTGGTATCGGCCCGGAGCGGCCGCTGGAACCGGAAATCGACAAACAA
ACGCTGTTCACAACGGAAATCGCCCTGTACTGCCATCCGGACTATCGGCTGCATAAAAAAACGGTGCGCTGGGAAGAGAT
TCAGAGCGAAGAGCTGATCGCCGTTGGCAACGAATCCGTTCCGATGATCTCCGCGACCGCTGGCGTGCGCATTAAGCCCA
AAATGACGGTGGAACATATGGCGACCGCCATGTCGCTGGCGGCGCAGTGTGAAGGCGTGGTGATCGCCGAAACCTTTTCC
CGCCATTACGCCAAAAGCTATCAATTAGCGACCTGTTCGCTCACGCCTCCGCTGCGGCGCAATATGAACCTTTATTTCCA
TGCGTGGCGCGCGCAAACGCCCGCCACGCAGCGCTTTAAAGAGTTTCTATTCAGATATATGGATGAACATCATGATGCCC
TGGCCAGCCAGCGGCGGGCCGGGGATTAA

Upstream 100 bases:

>100_bases
TGCGCCGCAGGCAGACACCCTGTATTTGCGAGTCGTATCAACGCGACCTTATCCAGCCTGAGATAAAATCCTCTCAGTAA
AGGGGTAACACAGGTGGCAA

Downstream 100 bases:

>100_bases
GGCAGGTTAAATATCGATGTTCGCCGCTTTCAGGGCGTTCTCCTCGATAAAGGCACGACGCGGCTCAACGGCATCACCCA
TCAGCGTAGTGAACAGCTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESVPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAETFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFKEFLFRYMDEHHDALASQRRAGD

Sequences:

>Translated_302_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESVPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAETFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFKEFLFRYMDEHHDALASQRRAGD
>Mature_302_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESVPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAETFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFKEFLFRYMDEHHDALASQRRAGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=300, Percent_Identity=26.3333333333333, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788748, Length=315, Percent_Identity=27.3015873015873, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081904, Length=231, Percent_Identity=26.8398268398268, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=28.4090909090909, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=195, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788887, Length=264, Percent_Identity=26.1363636363636, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=189, Percent_Identity=24.3386243386243, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786401, Length=175, Percent_Identity=23.4285714285714, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI48994962, Length=249, Percent_Identity=25.7028112449799, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34368; Mature: 34368

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLS
CCCCHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PDGEKFLPAAMRVVEEFQRAENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQTLFTTEIALYCHPDYRLHKK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCHHHHH
TVRWEEIQSEELIAVGNESVPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAETFS
HHHHHHHCCCCEEEECCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHCCCEEEHHHHH
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFKEFLFRYMDEHHDALASQRRA
HHHHHCCEEEEECCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
GD
CC
>Mature Secondary Structure
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLS
CCCCHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PDGEKFLPAAMRVVEEFQRAENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQTLFTTEIALYCHPDYRLHKK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCHHHHH
TVRWEEIQSEELIAVGNESVPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAETFS
HHHHHHHCCCCEEEECCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHCCCEEEHHHHH
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFKEFLFRYMDEHHDALASQRRA
HHHHHCCEEEEECCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
GD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]